View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3693_low_18 (Length: 451)
Name: NF3693_low_18
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 2592054 - 2591604
Alignment:
| Q |
10 |
attattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagctattgcagctggatgaggaggaagtgtctgaacttgatga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592054 |
attattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagctattgcagctggatgaggaggaagtgtctgaacttgatga |
2591955 |
T |
|
| Q |
110 |
tg---------atcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatgatggaatagtacttctggtcttattacattggtgtctg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591954 |
tgttgatgatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcatgatggaatagtacttctggtcttattacattggtgtctg |
2591855 |
T |
|
| Q |
201 |
ttgctgttgtttcatgcagtgaacttgtgtcaaacataaataaaggacatgttgatgaaaataaggtttcttttgttgttacattttcttggttggtaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591854 |
ttgctgttgtttcatgcagtgaacttgtgtcaaacataaataaaggacatgttgatgaaaataaggtttcttttgttgttacattttcttggttggtaaa |
2591755 |
T |
|
| Q |
301 |
gtaattatctagttgattaatggaactataattgatcaactgaggatgatgatgatcaatagttggtgttgataaattaggagcagaagaagaagacttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2591754 |
gtaattatctagttgattaatggaactataattgatcaactgaggatgatgatgatcaatagttggtgttgataaattaggagcagaagaagatgacttt |
2591655 |
T |
|
| Q |
401 |
ctaattttctttttgatccatgaattccaatagttttttatttcattgtct |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591654 |
ctaattttctttttgatccatgaattccaatagttttttatttcattgtct |
2591604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 41350367 - 41350421
Alignment:
| Q |
397 |
ctttctaattttctttttgatccatgaattccaatagttttttatttcattgtct |
451 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| || || ||||||||||||||| |
|
|
| T |
41350367 |
ctttcttattttctttttgatccaagaattccagtaattctttatttcattgtct |
41350421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University