View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_20 (Length: 440)
Name: NF3693_low_20
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 19327161 - 19326727
Alignment:
| Q |
1 |
acataatatcattcttccctctctcatccgcattcagcttctgaaattcgctgcacacgatcccatcatgccacgagaccttacattgtgcacagaacaa |
100 |
Q |
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| T |
19327161 |
acataatatcattcttccctctctcatccgcattcagcttctgaaattcgctacacccgatcccatcatgccacgagaccttacattgtgcacagaacaa |
19327062 |
T |
|
| Q |
101 |
tctcctacaattgggacactccgattgcagcacagcctccgtcccatcattaatcaaaagcgcagaacaatccggaaatggacagtaaaatttctcatta |
200 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19327061 |
tctcctacaatttggacactccgattgcagaacagcctccgtcccatcattaatcaaaagcgcagaacaatccggaaatggacagtaaaatttctcatta |
19326962 |
T |
|
| Q |
201 |
acatcaaacatcgcctcgcataaagcttttccccatcgatcaaaatcctcgacaggtagaatcgcccggcattcctcagcttccaataatccactgcaac |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
19326961 |
acatcaaacatcgcctcgcataaagctttcccccatcgatcaaaatcctcgacaggtaaaatcgcccggcattcctcagcttccaataatccactacaac |
19326862 |
T |
|
| Q |
301 |
cactttcaggacaccgtacattgatcacattttcttcaatttttgaacgaacgtaaagcacgacacaatcagaacaataagcatggttacaaccggtgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| |
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| T |
19326861 |
cactttcaggacaccgtacattgatcacattttcttcaatttttgaacgaacgtaaagcacgacgcaatcagagcagtaagcatggttacaaccagtgat |
19326762 |
T |
|
| Q |
401 |
gaaaaaagcttcctttgtggttttcgtttctgtgc |
435 |
Q |
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| T |
19326761 |
gaaaaaagcttccttagtggttttcgtttctgtgc |
19326727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 19324877 - 19324808
Alignment:
| Q |
141 |
gtcccatcattaatcaaaagcgcagaacaatccggaaatggacagtaaaatttctcattaacatcaaaca |
210 |
Q |
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|||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||| ||| ||||| |
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| T |
19324877 |
gtcccatcattaatcaaaagggtagaacaatccgcaaatagacagtaaaatttttcattagcataaaaca |
19324808 |
T |
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