View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_21 (Length: 429)
Name: NF3693_low_21
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 158 - 413
Target Start/End: Complemental strand, 49111203 - 49110948
Alignment:
| Q |
158 |
aattgaaaactcaatgattctgtatagagagcaataacaatccagtagctaactttagaaacaaattctagcaacaacgcaacgtcatatttcaaaaatc |
257 |
Q |
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| T |
49111203 |
aattgaaaactcaatgattctgtatagagagcaataacaatccagtagctaactttagaaaaaaaatctagcaacaacgcaacgtcatatttaaaaaatc |
49111104 |
T |
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| Q |
258 |
aaaatctcaaattatcttaagaaatgtaattaacatgtgaagcataccataagagatgtgttgatgcaaacctgaaaatagatgtgaccagatgtgttgt |
357 |
Q |
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| T |
49111103 |
aaaatctcaaattatcctaagaaatgtaattaacatgtgaagcataccataagagatgtgttgatgcaaacctgaaaatagacgtgaccagatgtgttgt |
49111004 |
T |
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| Q |
358 |
ctacaggtcttagctcaattggataaattgttgaaattgctaaaaggcgttctttt |
413 |
Q |
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| T |
49111003 |
ccacaggtcttagctcaattgggtaaattgttgaaattgctaaaaggcgttctttt |
49110948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 49111354 - 49111253
Alignment:
| Q |
58 |
tagggaattaaataaaaaataactaatataacagcatgtagttgaagtttcagatagaacattcatcaaacatctagcatgcctttaatcattctctaat |
157 |
Q |
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| T |
49111354 |
tagggaattaaataaaaaataactaatataacagcatgtagttgaagtttcacatagaacattcatcaaacatctagcatgcctttaatcattctctaat |
49111255 |
T |
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| Q |
158 |
aa |
159 |
Q |
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|| |
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| T |
49111254 |
aa |
49111253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 49111519 - 49111470
Alignment:
| Q |
11 |
gaagaacgcaaacacattattcaattataaaccaaatatcataagtttag |
60 |
Q |
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| T |
49111519 |
gaagaacgcagacacattattcaattataaatcatatatcataagtttag |
49111470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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