View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_25 (Length: 383)
Name: NF3693_low_25
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 4505734 - 4505372
Alignment:
| Q |
12 |
aagtggtggatataatcaaagaaattattggaattgacttcaaagtacagttttcatgacctatt-gttacccgctcatgaaattgatcccttcatttaa |
110 |
Q |
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| T |
4505734 |
aagtggtagatataatcaaaaaaattattggaattgacttcaaagtacagttttgatgaccgatttgttacccgctcctgaaattgatcccttcaattaa |
4505635 |
T |
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| Q |
111 |
aactt---tggttttggtcattttatccaattttaaactaaaaacagtgatgt-------tttaaatgacctaccataaaatctgattatgtgaaattat |
200 |
Q |
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| T |
4505634 |
aacttatttggttttggtcatttcatccaattttaaactaaaaatagtgatgtgacatgttttaaatgacctaccataaaatctgattatgtgaaataat |
4505535 |
T |
|
| Q |
201 |
caacaccccataaaagataataagaaaacatgctaaaactttagattcggtttaagaaatatattgta-nnnnnnnnnnnnngaagg-agaaatatattg |
298 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
4505534 |
caacactccataaaaaataataagaaaacatgctaaaactttagattcggtttaagaaatatattgtattttttttttttttgaaggaagaaatatattg |
4505435 |
T |
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| Q |
299 |
tattctcactaatgactcttggtgatgcttactgtatttaatttgc-ttgatgtgtcaaatac |
360 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4505434 |
tattctcactaatgcctcttggtgatgcttactgtatttaatttgctttgatgtgtcaaatac |
4505372 |
T |
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