View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_26 (Length: 358)
Name: NF3693_low_26
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 38877749 - 38878079
Alignment:
| Q |
10 |
gcagagaaagaagagaatgaaagttgtattctagaatgnnnnnnntgatatggcgggagagaatgtggaaatgtaagctaaaagaaacgggtatcagtaa |
109 |
Q |
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| T |
38877749 |
gcagagaaagaagagaattaaagttgtattctagaatgaaaaaaatgatatggcgggagagaatgtgaaaatgtaagctaacagaaacggttatcagtaa |
38877848 |
T |
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| Q |
110 |
aagtttactcaagtctctagcatggttacttgttacacaagccagctgtattttgtacattagattagacttaactgataaactaagtatagttagagtt |
209 |
Q |
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| T |
38877849 |
aagtttactcaagtctctagcatggttacttgttacacaagccagctgtattttgtacattagattagacttaactgataaactaagtatagttagagtt |
38877948 |
T |
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| Q |
210 |
agttatgattggttagggacttagggcagttatagttagttagggacttttccttaactcacacagtgtatgctggcccaataagaagttttgtaagaga |
309 |
Q |
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| T |
38877949 |
agctatgattggttagggacttagggcagttatagttagtaagggacttttccttcactcacacagtgtatgctggcccaataagaagttttttaagaga |
38878048 |
T |
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| Q |
310 |
gattgaaaagtttctctaatgttgccacatc |
340 |
Q |
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| T |
38878049 |
gattgaaaagtttctctaatgttgccacatc |
38878079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 44152183 - 44152105
Alignment:
| Q |
147 |
caagccagctgtattttgtacattagatt-agacttaactgataaactaagtatagttagagttagttatgattggtta |
224 |
Q |
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| T |
44152183 |
caagccagctgtattttgtacattagaaccagacttaactgataaactaactctagttacaattagttaagattggtta |
44152105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 5205393 - 5205489
Alignment:
| Q |
130 |
catggttacttgttacacaagccagctgtattttgtacattagattagacttaactgataaactaagtatagttagagttagttatgattggttagg |
226 |
Q |
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| T |
5205393 |
catggttacttgctatacaagtcatctgtgttttatacattagattggacttaactgataaactaactatagttacaattagtcatgattggttagg |
5205489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 19330492 - 19330570
Alignment:
| Q |
147 |
caagccagctgtattttgtacattagatt-agacttaactgataaactaagtatagttagagttagttatgattggtta |
224 |
Q |
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| T |
19330492 |
caagccagctgtattctgtacgttagaaccagacttaactgataaactaactctagttacagttagttatgattggtta |
19330570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 40285944 - 40286035
Alignment:
| Q |
134 |
gttacttgttacacaagccagctgtattttgtacattag-attagacttaactgataaactaagtatagttagagttagttatgattggtta |
224 |
Q |
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|||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
40285944 |
gttacttgatatgcaagccagctgtattttgtacattagtaccagacttaactgataaactaactctagttacagttagttatgattggtta |
40286035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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