View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_27 (Length: 358)

Name: NF3693_low_27
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_27
NF3693_low_27
[»] chr4 (4 HSPs)
chr4 (16-344)||(32000851-32001179)
chr4 (16-344)||(31941892-31942220)
chr4 (16-142)||(32003917-32004043)
chr4 (241-310)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (241-308)||(2950124-2950191)
chr7 (109-157)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (216-344)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (255-310)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (273-310)||(20732617-20732654)
chr3 (273-310)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (271-307)||(9622097-9622133)
chr8 (277-307)||(7195709-7195739)
chr8 (265-310)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (278-317)||(27632581-27632620)
chr1 (274-329)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (100-158)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 32001179 - 32000851
Alignment:
Q  16 attttgttaagaaaaagtcttgcaggtggctgtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001179 attttgttaagaaaaagtcttgcaggtggctgtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttg 32001080  T
Q  116 cttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001079 cttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctg 32000980  T
Q  216 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000979 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 32000880  T
Q  316 agttgtgctgctattgctgaccatctgtg 344  Q
    |||||||||||||||||||||||||||||    
T  32000879 agttgtgctgctattgctgaccatctgtg 32000851  T

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Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 31942220 - 31941892
Alignment:
Q  16 attttgttaagaaaaagtcttgcaggtggctgtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942220 attttgttaagaaaaagtcttgcaggtggctgtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttg 31942121  T
Q  116 cttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942120 cttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctg 31942021  T
Q  216 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942020 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 31941921  T
Q  316 agttgtgctgctattgctgaccatctgtg 344  Q
    ||||| |||||||||||||||||||||||    
T  31941920 agttgagctgctattgctgaccatctgtg 31941892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 32004043 - 32003917
Alignment:
Q  16 attttgttaagaaaaagtcttgcaggtggctgtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttg 115  Q
    |||||||| || ||||||||||||||| | |||||||||||||||||||| | |||||||||||||||||| | ||| || |||||||||||||||||||    
T  32004043 attttgttgaggaaaagtcttgcaggttgttgtggtttggaggattcaaattaaagttgtctttgaacttttattttgttagtttctctaacaagtcttg 32003944  T
Q  116 cttctgcttccaaacgagcactctccc 142  Q
    ||| |||||||||||||||||| ||||    
T  32003943 cttttgcttccaaacgagcactttccc 32003917  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 36246614 - 36246545
Alignment:
Q  241 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 310  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  36246614 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 36246545  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 2950191 - 2950124
Alignment:
Q  241 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttct 308  Q
    ||||||||| | |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2950191 attcccattttggttaatcttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 28944732 - 28944780
Alignment:
Q  109 agtcttgcttctgcttccaaacgagcactctcccattgagccatgtgac 157  Q
    ||||||||||||||||| |  |  |||||||||||||||||||||||||    
T  28944732 agtcttgcttctgcttcaagccttgcactctcccattgagccatgtgac 28944780  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 344
Target Start/End: Complemental strand, 18479076 - 18478948
Alignment:
Q  216 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 315  Q
    ||||||||||||||| || || ||||| ||||||||  | ||||||||||||| ||   ||||||| |  ||||| |||||||| |||||||| |||||     
T  18479076 ttttggtttgtgagtggtgggatctatccccattctgatgagtcttttcttgatgttaatgttccaatgattctttatttcattatctgttctccttggc 18478977  T
Q  316 agttgtgctgctattgctgaccatctgtg 344  Q
    ||  | ||||||||||  |||||||||||    
T  18478976 aggagagctgctattgtggaccatctgtg 18478948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 37881306 - 37881361
Alignment:
Q  255 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 310  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  37881306 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 37881361  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 20732617 - 20732654
Alignment:
Q  273 tgtgttccagtagttcttgatttcattgtctgttcttc 310  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20732617 tgtgttccagtagttctttatttcattgtctgttcttc 20732654  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 20740353 - 20740390
Alignment:
Q  273 tgtgttccagtagttcttgatttcattgtctgttcttc 310  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20740353 tgtgttccagtagttctttatttcattgtctgttcttc 20740390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 9622133 - 9622097
Alignment:
Q  271 tgtgtgttccagtagttcttgatttcattgtctgttc 307  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9622133 tgtgtgttccagtagttctttatttcattgtctgttc 9622097  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 307
Target Start/End: Complemental strand, 7195739 - 7195709
Alignment:
Q  277 ttccagtagttcttgatttcattgtctgttc 307  Q
    |||||||||||||||||||||||||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttc 7195709  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 39916955 - 39916910
Alignment:
Q  265 ttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 310  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  39916955 ttgatgtgagtgttccaatagttcttgatctcattgtctgttcttc 39916910  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 27632581 - 27632620
Alignment:
Q  278 tccagtagttcttgatttcattgtctgttcttcttggaag 317  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaag 27632620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 45594286 - 45594341
Alignment:
Q  274 gtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctat 329  Q
    |||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctat 45594341  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 3912071 - 3912013
Alignment:
Q  100 tctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgact 158  Q
    |||||||||||||| ||||| ||||| |  | |||||| ||||||||||||||||||||    
T  3912071 tctctaacaagtctagcttcagcttcaagtctagcactttcccattgagccatgtgact 3912013  T

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