View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_28 (Length: 336)
Name: NF3693_low_28
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_28 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27254276 - 27254036
Alignment:
| Q |
1 |
tagactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattacaggtgcaaacacgatgaaatggttttaggggatctcaatt |
100 |
Q |
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| T |
27254276 |
tagactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattacaggtgcaaacacgatgaaatggttttaggggatctcaatg |
27254177 |
T |
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| Q |
101 |
ttaaacctggtgaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaaccatgtt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254176 |
ttaaacctggtcaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaaccatgtt |
27254077 |
T |
|
| Q |
201 |
acatatatagctttctcttgtttaggatgtactatatggtg |
241 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
27254076 |
acatatatagctttttcttgtttaggatgtactatatggtg |
27254036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27294399 - 27294206
Alignment:
| Q |
1 |
tagactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattacaggtgcaaacacgatgaaatggttttaggggatctcaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
27294399 |
tagactttcttagagaagatagagtgaattatttaaactgattcaactttgttccattataggtgcaaacaagatgaaatggttttaggggatctcaacg |
27294300 |
T |
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| Q |
101 |
ttaaacctggtgaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaac |
194 |
Q |
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| T |
27294299 |
ttaaacctggtcaagcatgggaacaatgcccgagagaggccttaagaaaagtttccaaaattctcaaagatgaatttgacttggtatgttcaac |
27294206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 27426266 - 27426383
Alignment:
| Q |
73 |
gatgaaatggttttaggggatctcaattttaaacctggtgaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
172 |
Q |
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||||||||||||||||| ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426266 |
gatgaaatggttttaggcgatctgaatgttaaaccttgccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
27426365 |
T |
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| Q |
173 |
aatttgacttggtatgtt |
190 |
Q |
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| T |
27426366 |
aatttgacttggtatgtt |
27426383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 27405349 - 27405466
Alignment:
| Q |
73 |
gatgaaatggttttaggggatctcaattttaaacctggtgaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
172 |
Q |
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||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
27405349 |
gatgaaatggttttaggtgatctaaatgttaaacctggccaagcatgggagtattgcccaagagacgccttaagaagagtttccaaaattctgaaagatg |
27405448 |
T |
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| Q |
173 |
aatttgacttggtatgtt |
190 |
Q |
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||||| |||||||||||| |
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| T |
27405449 |
aatttaacttggtatgtt |
27405466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 13354805 - 13354932
Alignment:
| Q |
61 |
aggtgcaaacacgatgaaatggttttaggggatctcaattttaaacctggtgaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaa |
160 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |||| ||||| |||||||||||||| ||||| ||||||||| |||||| |
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| T |
13354805 |
aggtgcaaacaagatgaaatggttttaggtgatctgaatgttaaacctggtcaagcttgggaatattgcccaagagaagcctttagaagagttaccaaaa |
13354904 |
T |
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| Q |
161 |
ttctcaaagatgaatttgacttggtatg |
188 |
Q |
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| T |
13354905 |
ttctcaaagatgaatttgacttggtatg |
13354932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 12652 - 12488
Alignment:
| Q |
27 |
aattatttaaactgattcaactttgttccat---tacaggtgcaaacacgatgaaatggttttaggggatctcaattttaaacctggtgaagcatgggag |
123 |
Q |
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||||||| ||| |||| ||||||||| |||| || ||| |||| || |||||||| |||||||| ||| | ||| | |||||||| |||||||||| |
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| T |
12652 |
aattattgaaattgatgcaactttgtaccataattataggagcaagcaagatgaaattgttttaggtgatttgaatctacaacctggtcaagcatgggaa |
12553 |
T |
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| Q |
124 |
tattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatg |
188 |
Q |
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| T |
12552 |
tattgcccaagagaggccttaagaagagtctccaaaattctcaaagatgaatttgacttggtatg |
12488 |
T |
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