View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_3 (Length: 750)
Name: NF3693_low_3
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 395 - 714
Target Start/End: Original strand, 3929628 - 3929947
Alignment:
| Q |
395 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat |
494 |
Q |
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| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat |
3929727 |
T |
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| Q |
495 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
594 |
Q |
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| T |
3929728 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
3929827 |
T |
|
| Q |
595 |
ttttccaagagaaattagattcaaatcctaacnnnnnnntaaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaaa |
694 |
Q |
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| T |
3929828 |
ttttccaagagaaattagattcaaatcctaacaacaaaataaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaaa |
3929927 |
T |
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| Q |
695 |
tcttctaagccctttcgcct |
714 |
Q |
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|||||||||||||||||||| |
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| T |
3929928 |
tcttctaagccctttcgcct |
3929947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 3929187 - 3929520
Alignment:
| Q |
22 |
aggatggacgtaaaatttgacaggatcaaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttgatgatttactcaacaattat |
121 |
Q |
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| T |
3929187 |
aggatggaagtaaaatttgacaggatcaaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttggtgatttactcaacaattat |
3929286 |
T |
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| Q |
122 |
gtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatacattagatactctttctttcnnnnnnngtatcagtacatttgatagcctt |
221 |
Q |
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| T |
3929287 |
gtcttgagaattgcctctacactatacaaaagctattgagaatcaaaatacattagatactc--tctttctttttttgtatcagtacatttgatagcctt |
3929384 |
T |
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| Q |
222 |
gggagaggcttatcacaccattgccaaagctcaattactgtatatttcagtgttgcctattaattaatcattgcataccaggtttttattgctaaattga |
321 |
Q |
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| T |
3929385 |
gggagaggcttatcacaacattgccaaagctcaattagtgtatatttcagtgttgcctattaactaatcaatgcataccaggtttttattgctaaattga |
3929484 |
T |
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| Q |
322 |
tttagtgtagtaaatttgactacctgataaatgatt |
357 |
Q |
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| T |
3929485 |
tttagtgtagtaaatttgactacctgataaatgatt |
3929520 |
T |
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