View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_31 (Length: 326)
Name: NF3693_low_31
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_31 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 27254601 - 27254286
Alignment:
| Q |
11 |
cacagatgtcgtgtgagttcccaatactctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctg |
110 |
Q |
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| T |
27254601 |
cacagatgtcgtgtgagttcccaatactctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaaattctg |
27254502 |
T |
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| Q |
111 |
taatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttgga |
210 |
Q |
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| T |
27254501 |
taatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttgga |
27254402 |
T |
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| Q |
211 |
taaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttc |
310 |
Q |
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| T |
27254401 |
taaacttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttccttc |
27254302 |
T |
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| Q |
311 |
tttactgatatcattt |
326 |
Q |
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| T |
27254301 |
tttactggtatcattt |
27254286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 85 - 326
Target Start/End: Complemental strand, 27294647 - 27294409
Alignment:
| Q |
85 |
atgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttggg |
184 |
Q |
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| T |
27294647 |
atgttctgaggttatgtcaatttctgtaat---tcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctgtaccatttggg |
27294551 |
T |
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| Q |
185 |
actatggtattgacttctattttggataaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
284 |
Q |
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| T |
27294550 |
agcatggcattgacttctattttgggtaaacttgcaccggattgtggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
27294451 |
T |
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| Q |
285 |
aaattccttggtacacatgttctttctttactgatatcattt |
326 |
Q |
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| T |
27294450 |
caattccttggtacacatgttccttctttactgatatcattt |
27294409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 27405008 - 27405204
Alignment:
| Q |
116 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
215 |
Q |
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| T |
27405008 |
tttcaggctgttcctaggaagcgtttcaatgattttgtttcgaagaatggcgttggtttagcttttgcgactatgggaatgacctcttttttagatggac |
27405107 |
T |
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| Q |
216 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttctt |
312 |
Q |
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| T |
27405108 |
ctgcagctgggtcagggttaggtgcagttggagaaacaagattaacacctgatttgtctactaaaaggaggattccttggtacacaagttctctctt |
27405204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 27425868 - 27426064
Alignment:
| Q |
116 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
215 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||||| |||||| | ||| |||| | | ||| |
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| T |
27425868 |
tttcaggctgttcctagaaagcgtttcaatgatgttgtttcgaagaacggggttggtttagcatttgcacctatgggaatgagttctttaatagatgggc |
27425967 |
T |
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| Q |
216 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgttctttctt |
312 |
Q |
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|||| | | |||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||||| |
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| T |
27425968 |
ctgcagccgggtctggtttaggtgcagttggtgaaacaagattaacgcctgacttgtctactaaaaggaggattccttggtacacaagttctttctt |
27426064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 12901 - 12720
Alignment:
| Q |
116 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
215 |
Q |
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| T |
12901 |
tttcaggctattcctagaaagcgtttctatgatgttgttactaagaatggtgttggtttagcatttgtgagtatggtaatgacttcttttttggatggat |
12802 |
T |
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| Q |
216 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggta |
297 |
Q |
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| T |
12801 |
ctccagctggttctggtttaggttcagttggtgaagcaagattaacacctgatttatctactaaaaggacaattccttggta |
12720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 13354343 - 13354528
Alignment:
| Q |
116 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||||| | ||| ||| |||||||| |||| |||| | |
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| T |
13354343 |
tttcaggctattcctagaaagcatttctatgatgttgttaagaagaatgggattggtttagcatttgtaagtatcgtaatgacttctgttttagatagac |
13354442 |
T |
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| Q |
216 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacaca |
301 |
Q |
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| T |
13354443 |
ctgcacctggctctggtctagggttagtcggtgatgcaagagtagcaccagatttgtctactataaggacaattccttggtacaca |
13354528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 6792298 - 6792460
Alignment:
| Q |
132 |
gaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctgg |
231 |
Q |
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| T |
6792298 |
gaaagcatttttatgatgatgttacaaagaatggggttgctttagcagatgagaatatggtaatgacttctgttttggatagacctgcacgtgcttatgg |
6792397 |
T |
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| Q |
232 |
tttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttg |
294 |
Q |
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| T |
6792398 |
tttaggttttattggtgaagcaagatttaaacctcatttgtcttctataagtacaattccttg |
6792460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 6799525 - 6799637
Alignment:
| Q |
151 |
tgttacgaagaatggggttgctttaccatttgggactatggtattga---cttctattttggataaagttgcacctgattctggtttaggttatgttggt |
247 |
Q |
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|||||| ||||||||||||| |||| || ||||||||||||| ||| ||||| ||||||||| | ||||||| || ||||||||||| | ||||| |
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| T |
6799525 |
tgttacaaagaatggggttggtttagcagatgggactatggtaatgacttcttcttttttggatagacctgcaccttcttatggtttaggttttattggt |
6799624 |
T |
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| Q |
248 |
gaagcaagattaa |
260 |
Q |
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||||||||||||| |
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| T |
6799625 |
gaagcaagattaa |
6799637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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