View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_36 (Length: 307)

Name: NF3693_low_36
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_36
NF3693_low_36
[»] chr4 (4 HSPs)
chr4 (18-293)||(32000851-32001126)
chr4 (18-293)||(31941892-31942167)
chr4 (17-91)||(32003917-32003991)
chr4 (190-259)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (190-257)||(2950124-2950191)
chr7 (58-106)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (165-293)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (204-259)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (222-259)||(20732617-20732654)
chr3 (222-259)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (220-256)||(9622097-9622133)
chr8 (226-256)||(7195709-7195739)
chr8 (214-259)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (227-266)||(27632581-27632620)
chr1 (223-278)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (49-107)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 32001126 - 32000851
Alignment:
Q  18 aagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001126 aagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagct 32001027  T
Q  118 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001026 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 32000927  T
Q  218 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000926 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 32000851  T

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Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 31942167 - 31941892
Alignment:
Q  18 aagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942167 aagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgactgaggttagct 31942068  T
Q  118 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942067 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 31941968  T
Q  218 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31941967 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgagctgctattgctgaccatctgtg 31941892  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 32003991 - 32003917
Alignment:
Q  17 aaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctccc 91  Q
    ||||||||||||||||||| | ||| || |||||||||||||||||||||| |||||||||||||||||| ||||    
T  32003991 aaagttgtctttgaacttttattttgttagtttctctaacaagtcttgcttttgcttccaaacgagcactttccc 32003917  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 36246614 - 36246545
Alignment:
Q  190 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 259  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  36246614 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 36246545  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 2950191 - 2950124
Alignment:
Q  190 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttct 257  Q
    ||||||||| | |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2950191 attcccattttggttaatcttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 28944732 - 28944780
Alignment:
Q  58 agtcttgcttctgcttccaaacgagcactctcccattgagccatgtgac 106  Q
    ||||||||||||||||| |  |  |||||||||||||||||||||||||    
T  28944732 agtcttgcttctgcttcaagccttgcactctcccattgagccatgtgac 28944780  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 18479076 - 18478948
Alignment:
Q  165 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 264  Q
    ||||||||||||||| || || ||||| ||||||||  | ||||||||||||| ||   ||||||| |  ||||| |||||||| |||||||| |||||     
T  18479076 ttttggtttgtgagtggtgggatctatccccattctgatgagtcttttcttgatgttaatgttccaatgattctttatttcattatctgttctccttggc 18478977  T
Q  265 agttgtgctgctattgctgaccatctgtg 293  Q
    ||  | ||||||||||  |||||||||||    
T  18478976 aggagagctgctattgtggaccatctgtg 18478948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 37881306 - 37881361
Alignment:
Q  204 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 259  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  37881306 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 37881361  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 20732617 - 20732654
Alignment:
Q  222 tgtgttccagtagttcttgatttcattgtctgttcttc 259  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20732617 tgtgttccagtagttctttatttcattgtctgttcttc 20732654  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 20740353 - 20740390
Alignment:
Q  222 tgtgttccagtagttcttgatttcattgtctgttcttc 259  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20740353 tgtgttccagtagttctttatttcattgtctgttcttc 20740390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 9622133 - 9622097
Alignment:
Q  220 tgtgtgttccagtagttcttgatttcattgtctgttc 256  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9622133 tgtgtgttccagtagttctttatttcattgtctgttc 9622097  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 7195739 - 7195709
Alignment:
Q  226 ttccagtagttcttgatttcattgtctgttc 256  Q
    |||||||||||||||||||||||||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttc 7195709  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 39916955 - 39916910
Alignment:
Q  214 ttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 259  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  39916955 ttgatgtgagtgttccaatagttcttgatctcattgtctgttcttc 39916910  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 27632581 - 27632620
Alignment:
Q  227 tccagtagttcttgatttcattgtctgttcttcttggaag 266  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaag 27632620  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 45594286 - 45594341
Alignment:
Q  223 gtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctat 278  Q
    |||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctat 45594341  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3912071 - 3912013
Alignment:
Q  49 tctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgact 107  Q
    |||||||||||||| ||||| ||||| |  | |||||| ||||||||||||||||||||    
T  3912071 tctctaacaagtctagcttcagcttcaagtctagcactttcccattgagccatgtgact 3912013  T

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