View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_37 (Length: 302)
Name: NF3693_low_37
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 33096166 - 33095913
Alignment:
| Q |
20 |
cgtgattgttctaatttcattttcatatgcatccttttttgtaggtctgaaattcgatttgccagatctatcatttcaaggaggtgtgatcttcttattt |
119 |
Q |
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| T |
33096166 |
cgtgattgttctaatttcattttcatatgcatccttttttgtaggtctgaaattcaatttcccagatctatcatttcaaggaggcgtgatcttcttattt |
33096067 |
T |
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| Q |
120 |
atattgcttttggagtttcttcatgttcatcaatctatagttgaagtgttctcgttgcaggtacaattggatcgttgcgatgatcatgagttttgtcatg |
219 |
Q |
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| T |
33096066 |
atattgcttttggagtttcttcatgttcatcaatc--tagttgaagtgttctcgttgcaggtacaattggatcgttgcgatgatcatgagtttcgtcatg |
33095969 |
T |
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| Q |
220 |
gattgaaattgaagagaagattattgtaacagaagcattgttatgaatttagttac |
275 |
Q |
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| T |
33095968 |
gattgaaattgaagagaagattattgtaacagaagcattgttatgaatttagttac |
33095913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 33081480 - 33081375
Alignment:
| Q |
166 |
tgttctcgttgcaggtacaattggatcgttgcgatgatcatgagttttgtcatggattgaaattgaagagaagattattgtaacagaagcattgttatga |
265 |
Q |
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| T |
33081480 |
tgttctcgttgcaggtacaattggatcattgtgatgatcgcgagtttcg-catggattgaaattgaagagaagattattgtaacaaaagcgttgttatga |
33081382 |
T |
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| Q |
266 |
atttagt |
272 |
Q |
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||||||| |
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| T |
33081381 |
atttagt |
33081375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 33081598 - 33081516
Alignment:
| Q |
21 |
gtgattgttctaatttcattttcatatgcatccttttttgtaggtctgaaattcgatttgccagatctatcatttcaaggagg |
103 |
Q |
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| T |
33081598 |
gtgattgttctaatttcattttcatttgcatcattttttctaggtctgaagttcgatttgccagatctatcattgcgaggagg |
33081516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 22765790 - 22765547
Alignment:
| Q |
24 |
attgttctaatttcattttcatatgcatccttttttgtaggtctgaaattcgatttgccagatctatcatttcaaggaggtgtgatcttcttatttatat |
123 |
Q |
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| T |
22765790 |
attgttctaatttcattttcatctgcatcattttttgtagggctgaagttccatttcccaaatctatcattgcgagtaggcgcgatcttcttatttatat |
22765691 |
T |
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| Q |
124 |
tgcttttggagtttcttcatgttcatcaatctatagttgaagtgttctcgttgcaggtacaattggatcgttgcgatgatcatgagttttgtcatggatt |
223 |
Q |
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| T |
22765690 |
ttcattcggagttttttcatgttcatcaacctaa--ttgaagtgttctcgttgcaggtacaattggattgttgcaatgattgcgatttttgtcatggatt |
22765593 |
T |
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| Q |
224 |
gaaattgaagagaagattattgtaacagaagcattgttatgaattt |
269 |
Q |
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| T |
22765592 |
gaaattgaagagaagattattgtaacagaagtgttgttatgaattt |
22765547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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