View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_39 (Length: 294)
Name: NF3693_low_39
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 3084436 - 3084153
Alignment:
| Q |
1 |
gctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacag |
100 |
Q |
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| T |
3084436 |
gctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacag |
3084337 |
T |
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| Q |
101 |
cgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3084336 |
cgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaattccact |
3084237 |
T |
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| Q |
201 |
caacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
3084236 |
caacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtg |
3084153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 3093303 - 3093033
Alignment:
| Q |
14 |
cggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggatt |
113 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||| ||||||||| || |
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| T |
3093303 |
cggcttcaatatagctgccaaagctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggtt |
3093204 |
T |
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| Q |
114 |
atctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagt |
213 |
Q |
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| T |
3093203 |
atctgacattccttgtcctacaaatggttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagt |
3093104 |
T |
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| Q |
214 |
tgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgactcaagtatgctctgtg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
3093103 |
tgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccctgtg |
3093033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 45939005 - 45938961
Alignment:
| Q |
102 |
gttcattggattatctgacattccttgtcctaccaaaggttgatc |
146 |
Q |
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||||||||||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
45939005 |
gttcattggattatctgccatcccttgacctaccaaaggctgatc |
45938961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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