View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_4 (Length: 747)
Name: NF3693_low_4
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_4 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 187 - 728
Target Start/End: Complemental strand, 6627 - 6074
Alignment:
| Q |
187 |
tgtaccacatgctctgtcatgcaaagtccattccctttagcaacattttatgcaactttatatgcttataggacctcgacttgtgtcaacatttgccaaa |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6627 |
tgtaccacatgctctgtcatgcaaagtccattccctttagcaacattttatgcaactttatatgcttataggacctcgagttgtgtcaacatttgccaaa |
6528 |
T |
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| Q |
287 |
acctaatagacaacaattatatcagtgcccttacaaaacaagaatttgccagattattaaaattttcctttaatttcattgtagtaattgaaatgtccta |
386 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527 |
acctaatagacaccaattatatcagtgccgttacaaaacaagaatttgctagattattaaaattttcctttaatttcattgtagtaattgaaatgtccta |
6428 |
T |
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| Q |
387 |
aaactaatttatga--------------cacccaaaaaattgttttgaaccattaagccactacaaaaatatatgactaatcattcaagtattatgaata |
472 |
Q |
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|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6427 |
aaactaatttataattaagttaaatcaacaccccaaaaattgttttgaaccattaagccactacaaaaatat--gactaatcattcaagtattatgaata |
6330 |
T |
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| Q |
473 |
gtttgatcatccacatatacttttagtaacaaatcaaatagtgtgtcaattgtttccatgaaatatgatatcattagatcattttttaaagttcaacaaa |
572 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6329 |
gtttgatcatccacatatacctttagtaacaaatcaaatagtgtgtcaattgtttccatgaaatatgatatcattagatcattttctaaagttcaacaaa |
6230 |
T |
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| Q |
573 |
tctaaaaattcatctttttgaaagaaatcattataaaattgattctatgttttaagacacttgaatggttctaagtttgaataggtgtggtggtgcctac |
672 |
Q |
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| T |
6229 |
tctataaattcatctttttgaaagaaatcattataaaattggttctatgttttaagacacttgaatggttctaagtttgaataggtgtggtggtgcctac |
6130 |
T |
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| Q |
673 |
tatcattatcatgactacacgaagaaaatgattattaagtatttttaggcaagtac |
728 |
Q |
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| T |
6129 |
tatcattatcatgaatataggaagaaaatgattattaagtatttttaggcaagtac |
6074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 6768 - 6683
Alignment:
| Q |
108 |
acaaggagttattttgacgattttcacaaatgtgaagatacatatctagttcattcgaacaaggattgaatatttcatttgtacca |
193 |
Q |
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| T |
6768 |
acaaggagttattttgacgattttcacaaatgtgaagatacatatctagttcattcgaacaaggattgaatattttatttgtacca |
6683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 18872780 - 18872618
Alignment:
| Q |
235 |
tatgcaactttatatgcttataggacctcgacttgtgtcaacatttgccaaaacctaatagacaacaattatatcagtgcccttacaaaacaagaatttg |
334 |
Q |
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|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18872780 |
tatgtaacgttatatgcttataggacctcgagttgtgtcaacatttgccaaaacctaatagacaacaattatatcagtgccctta-aaaacaagaatttg |
18872682 |
T |
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| Q |
335 |
ccagattattaaaattttcctttaatttcattgtagtaattgaaatgtcctaaaactaatttat |
398 |
Q |
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| T |
18872681 |
ccagattattaaaattttcctttaatttcattgtagtaattgaaatgtcctaaaactaatttat |
18872618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 112677 - 112493
Alignment:
| Q |
204 |
catgcaaagtccattccctttagcaacattttatgcaactttatatgcttataggacctcgacttgtgtcaacatttgccaaaacctaatagacaacaat |
303 |
Q |
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| T |
112677 |
catgcaaactccattccctttagcaacattttatctaacgttatatccttacttcaccttgagttgtctcaa--tttgccaaaacctagtagacaacaat |
112580 |
T |
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| Q |
304 |
tatatcagtgcccttacaaaacaagaatttgccagattattaaaattttcctttaatttcattgtagtaattgaaatgtcctaaaac |
390 |
Q |
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| T |
112579 |
tatattagttcccttacaaaacaagaatttttcagagtattaaaattttactttaatttcattgtagtaattgaaatgtcctaaaac |
112493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 454 - 580
Target Start/End: Complemental strand, 112427 - 112300
Alignment:
| Q |
454 |
cattcaagtattatgaatagtttgatcatccacatatacttttagtaacaa---atcaaatagtgtgtcaattgtttccatgaaatatgatatcattaga |
550 |
Q |
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||||||| |||||| |||||||| ||||| | ||||| |||||||||| || || ||||||||| |||||| |||||||||| ||||||||||| || |
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| T |
112427 |
cattcaaatattatcaatagtttcatcattctcatattcttttagtaataataaattaaatagtgtttcaatt-tttccatgaa-tatgatatcatgtga |
112330 |
T |
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| Q |
551 |
tcattttttaaagttcaacaaatctaaaaa |
580 |
Q |
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|||| || ||||||||||| |||||||||| |
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| T |
112329 |
tcatgttctaaagttcaacgaatctaaaaa |
112300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 718
Target Start/End: Complemental strand, 134742 - 134667
Alignment:
| Q |
643 |
ctaagtttgaataggtgtggtggtgcctactatcattatcatgactacacgaagaaaatgattattaagtattttt |
718 |
Q |
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| T |
134742 |
ctaagtttgaataggtgtcgtggtgactactatcattatcatgattatagggagaaaataatgattaagttttttt |
134667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 112820 - 112740
Alignment:
| Q |
114 |
agttattttgacgattttcacaaatgtgaagatacatatctagttcattcgaacaagga-ttgaatatttcatttgtacca |
193 |
Q |
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|||| ||||||||||||| | |||| || ||||| || |||||||||||| |||||||| |||||||||| | |||||||| |
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| T |
112820 |
agttcttttgacgatttttaaaaatatgtagataaatctctagttcattctaacaaggagttgaatattttacttgtacca |
112740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 119 - 329
Target Start/End: Original strand, 50615426 - 50615634
Alignment:
| Q |
119 |
ttttgacgattttcacaaatgtgaagatacatatctagttcattcgaacaagga-ttgaatatttcatttgtaccacatgctctgtcatgcaaagtccat |
217 |
Q |
| |
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||||||| |||| |||||||||| |||| ||||||||||| ||| || | || ||||||||| | ||||||||| | ||||||||| ||||||| || |
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| T |
50615426 |
ttttgacaatttccacaaatgtgtagattaatatctagttcgttctaatacagagttgaatattac--ttgtaccacctactctgtcatacaaagtctat |
50615523 |
T |
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| Q |
218 |
tccctttagcaacattttatgcaactttatatgcttataggacctcgacttgtgtcaacatttgccaaaacctaatagacaacaattatatcagtgccct |
317 |
Q |
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| T |
50615524 |
tcccttgagcaacattttatccaacttt-tatgcttattgcaccttgagttgtgtcaacatttgccaaaacctattaggcaacaatgatgtcagtgcact |
50615622 |
T |
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| Q |
318 |
tacaaaacaaga |
329 |
Q |
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|||||||||||| |
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| T |
50615623 |
tacaaaacaaga |
50615634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 25335747 - 25335682
Alignment:
| Q |
267 |
ttgtgtcaacatttgccaaaacctaatagacaacaattatatcagtgcccttacaaaacaagaatt |
332 |
Q |
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|||||||||||||| |||||||||| || |||||||| || | ||||| || |||||||||||||| |
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| T |
25335747 |
ttgtgtcaacattttccaaaacctagtacacaacaatgattttagtgcactaacaaaacaagaatt |
25335682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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