View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_46 (Length: 268)
Name: NF3693_low_46
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 5155558 - 5155807
Alignment:
| Q |
8 |
attatactcaaatacagaatcagcggaaatagcggtacactcgacttagggaggaaaatggaactaggggaatttatcgacaaacgataagaaacgaggg |
107 |
Q |
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| T |
5155558 |
attaaactcaaatatggaatcagcggaaatagcggtacactcgacttagggaggaaaacggaaccaggggaattgatcgacaaacgataagaaacggggg |
5155657 |
T |
|
| Q |
108 |
tttttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatgggaag---aagaagaagaagccaggtatttgtgtc |
204 |
Q |
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| T |
5155658 |
tttttaagtttaagaagtggaaggaaatcaaggtgaatcatttcaaaagattcattgaaagcatgggaagaagaagaagaagaagtcgggtatttgtgtc |
5155757 |
T |
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| Q |
205 |
gagcaagaagatgacctgcgaggg-----aagaagacgagggttttacgt |
249 |
Q |
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| T |
5155758 |
gagcaagaagatgacctgcgagggaacaaaagaagacgagggttttacgt |
5155807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 8530690 - 8530510
Alignment:
| Q |
8 |
attatactcaaatacagaatcagcggaaatagcggtacactcgacttagggaggaaaatggaactaggggaatttatcgacaaacgataagaaacgaggg |
107 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
8530690 |
attaaactcaaatacggaatcagcggaaataacggtacactcgacttagggaggaaaacggaaccaggggaattgatcgacaaacgataagaaacgaggg |
8530591 |
T |
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| Q |
108 |
tttttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatgggaagaagaagaagaag |
189 |
Q |
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| T |
8530590 |
ttttaaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattca-tgaaagcatggaaagaagaagaagaag |
8530510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 8530516 - 8530481
Alignment:
| Q |
174 |
gaagaagaagaagaagccaggtatttgtgtcgagca |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
8530516 |
gaagaagaagaagaagccgggtatttgtgtcgagca |
8530481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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