View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_51 (Length: 251)

Name: NF3693_low_51
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_51
NF3693_low_51
[»] chr2 (3 HSPs)
chr2 (1-134)||(36053300-36053433)
chr2 (134-233)||(36053536-36053635)
chr2 (152-192)||(35469451-35469491)
[»] chr4 (1 HSPs)
chr4 (155-233)||(11784990-11785068)
[»] chr3 (3 HSPs)
chr3 (142-233)||(11047457-11047548)
chr3 (137-194)||(50196898-50196955)
chr3 (169-233)||(36236609-36236673)
[»] chr7 (1 HSPs)
chr7 (137-196)||(8745882-8745941)
[»] chr5 (2 HSPs)
chr5 (140-234)||(28431979-28432073)
chr5 (137-233)||(8402143-8402239)
[»] chr1 (1 HSPs)
chr1 (134-192)||(25685733-25685791)
[»] chr8 (1 HSPs)
chr8 (139-192)||(31599880-31599933)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 36053300 - 36053433
Alignment:
Q  1 attcatgtactccatgtttaagatataatagttttacgcctttaatataaataatattttcagtttgaaaaattctttgatactataagaaaagatgcgt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  36053300 attcatgtactccatgtttaagatataataattttacgcctttaatataaataatattttcactttgaaaaattctttggtactataagaaaagatgcgt 36053399  T
Q  101 accttatttnnnnnnngaaagaaagatgcgtacc 134  Q
    |||||||||       ||||||||||||||||||    
T  36053400 accttatttaaaaaaagaaagaaagatgcgtacc 36053433  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 36053536 - 36053635
Alignment:
Q  134 cttatcccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactaca 233  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||| ||||||| |||||||||    
T  36053536 cttattccaaaagttagtttaaaagatgaaagtattcaaacatatttacacactaaacagtccaagaacctgagcaatacggaactaaaagcaaactaca 36053635  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 35469451 - 35469491
Alignment:
Q  152 ttaaaggatgaaagtattcaaacatatttacacactcaaca 192  Q
    ||||||||| ||| |||||||||||||||| ||||||||||    
T  35469451 ttaaaggataaaaatattcaaacatatttatacactcaaca 35469491  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 11785068 - 11784990
Alignment:
Q  155 aaggatgaaagtattcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactaca 233  Q
    ||||||||  ||| ||||||||||||| |||||||||||||| | ||||| || |||| |||||||| |||||||||||    
T  11785068 aaggatgagggtactcaaacatatttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactaca 11784990  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 11047548 - 11047457
Alignment:
Q  142 aaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactaca 233  Q
    ||||||||| | |||||||||  ||| |||| | |||||| |||||||||||  || |||||| ||||||| ||||||| ||||||||||||    
T  11047548 aaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtgggactagaaacaaactaca 11047457  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 50196955 - 50196898
Alignment:
Q  137 atcccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagt 194  Q
    |||||||||||||| | |||||||||  ||||| ||||||||||| ||||||||||||    
T  50196955 atcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagt 50196898  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 36236609 - 36236673
Alignment:
Q  169 tcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactaca 233  Q
    ||||||||||||| ||| ||||||||||||||| |  |||||||  |||||  ||||||||||||    
T  36236609 tcaaacatatttatacattcaacagtccaaaaatcatagcaatgttggactggaaacaaactaca 36236673  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 8745882 - 8745941
Alignment:
Q  137 atcccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagtcc 196  Q
    |||||||||||||| |||||||||||   || || |||||||||| ||||||||||||||    
T  8745882 atcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagtcc 8745941  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 28431979 - 28432073
Alignment:
Q  140 ccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactacat 234  Q
    ||||||| |||||||||||||||   || |||| |||||||| ||||||| ||| |||  ||||||||||||| | ||| || ||||||| ||||    
T  28431979 ccaaaagctagtttaaaggatgaggatactcaagcatatttatacactcagcagcccaggaacctaagcaatgtgagacaaataacaaacaacat 28432073  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 8402143 - 8402239
Alignment:
Q  137 atcccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaacagtccaaaaacctaagcaatgcgggactaaaaacaaactaca 233  Q
    |||||||||||||| | |||||| ||  ||| ||||||||||||| |||||| |||| || ||||||| ||  ||| || | ||| |||||||||||    
T  8402143 atcccaaaagttagctcaaaggaggagggtactcaaacatatttatacactcgacagcccgaaaacctgagagatgtggaagtaacaacaaactaca 8402239  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 25685791 - 25685733
Alignment:
Q  134 cttatcccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaaca 192  Q
    ||||||| ||||| ||| | ||| ||||| |||||||||||||||||| ||||||||||    
T  25685791 cttatcctaaaagctagctcaaatgatgagagtattcaaacatatttatacactcaaca 25685733  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 31599933 - 31599880
Alignment:
Q  139 cccaaaagttagtttaaaggatgaaagtattcaaacatatttacacactcaaca 192  Q
    ||||||| |||| | |||||||||||||| ||||||||||||| ||| ||||||    
T  31599933 cccaaaaattagctcaaaggatgaaagtactcaaacatatttatacattcaaca 31599880  T

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