View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_59 (Length: 238)
Name: NF3693_low_59
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 34277713 - 34277499
Alignment:
| Q |
6 |
gtaagtgtggctcactaggtaggctcattccactatggagtcttagatgatagcactagcaacaactaatgaaaatgtgttgatcccttgtgttagtatc |
105 |
Q |
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| T |
34277713 |
gtaagtgtggctcattaggtaggctcattccactatggagtcttagatgatagcgctagctacaactaatgaaaatgtgttgatcccttgtgttagtatc |
34277614 |
T |
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| Q |
106 |
atgaataagataagacatatagaaaaatgaattactcatgatggtaacccaacctaaaagactaaaaatcctaagaatcagattcaacgagtaataacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34277613 |
atgaataagataagacatatagaaaaatgaattactcatgatggtaacccgacctaaaagactaaaaatcctaagaatcagattcaacgagtaataacaa |
34277514 |
T |
|
| Q |
206 |
attacgaacatgcta |
220 |
Q |
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||||||||||||||| |
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| T |
34277513 |
attacgaacatgcta |
34277499 |
T |
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