View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_6 (Length: 672)
Name: NF3693_low_6
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 40221138 - 40220693
Alignment:
| Q |
18 |
caatgtgggaaagggagggacagaatctgtggttccctcaccatgtttaacactacagttctcgtaatttgatagctgtctgtcaatatgcctcagggca |
117 |
Q |
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| T |
40221138 |
caatgtgggaaagggagggacagaatatgtggttccctcaccatgtttaacactacagttctcgtaatttgatagctgtctgtcaatatgcctcagggca |
40221039 |
T |
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| Q |
118 |
cagcagattttgaggttttgtgaaaaatgctgatttttaatgtttttaaatagtaataactgcaagaattattattaattactatagagtataatagaca |
217 |
Q |
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| T |
40221038 |
cagcagattttgaggttttgtgaaaaatgctgatttttaatgtttttaaatagtagtaactgcaagaattattattaattactatagagtataatagaca |
40220939 |
T |
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| Q |
218 |
tgtttattattattatccaacttgtatagatatatgtttattactactatatccaacttg----------------tattagcaatatatggaagtttaa |
301 |
Q |
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| T |
40220938 |
tgtttattattattatccaacttgtatagatatatgtttattactactatatccaacttgtattgttatttacttgtattagcaatatatggaagtttaa |
40220839 |
T |
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| Q |
302 |
tactataaacttgaatttgttgagaaaatagttgtcaaaaatgaatgtgctgagaaaaagtgtttggtccggatct-------------------tcata |
382 |
Q |
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| T |
40220838 |
tactataaacttgaatttgttgagaaaatagttgtcaaaaatgaatgtgctgagaaaaagtgtttggtccggatcttcacgttagactaaatcaatcata |
40220739 |
T |
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| Q |
383 |
caaatagaatttgacaccatatatttatccaaacattaaggaattt |
428 |
Q |
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| T |
40220738 |
caaatagaatttgaaaccatatatttatccaaacattaaggaattt |
40220693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 432 - 655
Target Start/End: Complemental strand, 40220636 - 40220415
Alignment:
| Q |
432 |
gccaaatcgcagtgtcagtcatggcgttggtgaatcgaacgatgaaggctaggctggtcattacnnnnnnncaagagtgggattatccaaaacaggataa |
531 |
Q |
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| T |
40220636 |
gccaaatcgcagtgtcagtcatggtgttggtgaatcgaacgatgaaggctaggctggtaattacaaaaaa-caagagagggactatccaaaacaggataa |
40220538 |
T |
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| Q |
532 |
gagtatttgagcacaattacaatattatcatagtttgagccagaggaaatag-ggggctaatgatctcttgacttccgtgctacaaaaaacattacatct |
630 |
Q |
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| T |
40220537 |
gagtatttgagcacaattacaatattatcatagtttgagccggaggaaataggggggctaatga--tcttgacttccgtgctacaaaaaacattacatct |
40220440 |
T |
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| Q |
631 |
ctaataaaaatcttaagacttgata |
655 |
Q |
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| T |
40220439 |
ctaataaaaatcttaagacttgata |
40220415 |
T |
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