View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_62 (Length: 235)

Name: NF3693_low_62
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_62
NF3693_low_62
[»] chr5 (8 HSPs)
chr5 (1-222)||(3215942-3216163)
chr5 (10-222)||(3202032-3202244)
chr5 (10-222)||(3208006-3208218)
chr5 (142-222)||(3225847-3225927)
chr5 (146-222)||(3231095-3231171)
chr5 (146-222)||(3220862-3220938)
chr5 (146-222)||(3178870-3178946)
chr5 (146-222)||(3239894-3239970)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3216163 - 3215942
Alignment:
Q  1 tcaagacaatctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3216163 tcaagacaatctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattc 3216064  T
Q  101 aatggaactgttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3216063 aatggaactgttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataa 3215964  T
Q  201 ttggacctggagtgaacattct 222  Q
    ||||||||||||||||||||||    
T  3215963 ttggacctggagtgaacattct 3215942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 3202244 - 3202032
Alignment:
Q  10 tctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaact 109  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  3202244 tctacctgctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaact 3202145  T
Q  110 gttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctg 209  Q
    ||||||||||||||   | |||||||||| ||||  |||||||||||||| |||| | ||  |||||| |||||||||||||||||||||||||||||||    
T  3202144 gttattggaaatccactttcccctcaagttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctg 3202045  T
Q  210 gagtgaacattct 222  Q
    || ||||||||||    
T  3202044 gattgaacattct 3202032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 3208218 - 3208006
Alignment:
Q  10 tctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaact 109  Q
    |||||||||||  | ||||||||||||||||||||||  |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||    
T  3208218 tctacctgctgtgcatgtaagttactctgctggtttaaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaact 3208119  T
Q  110 gttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctg 209  Q
    || |||||||||||||||||||||||||| ||||  |||||||||||||| |||| | ||| |||||| ||||||||||||||||||||| |||| ||||    
T  3208118 gtcattggaaatcccaatgcccctcaagttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctg 3208019  T
Q  210 gagtgaacattct 222  Q
    || ||||||||||    
T  3208018 gattgaacattct 3208006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3225927 - 3225847
Alignment:
Q  142 ttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattct 222  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||| || || || ||||||||    
T  3225927 ttacttttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacatcattggtccaggtgtcaacattct 3225847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 3231171 - 3231095
Alignment:
Q  146 ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattct 222  Q
    ||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||| || || || ||||||||    
T  3231171 ttttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacatcattggtccaggtgtcaacattct 3231095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 3220938 - 3220862
Alignment:
Q  146 ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattct 222  Q
    ||||| ||||||||||||| ||||||||| || |||||||| ||||||||||| ||||| || || || ||||||||    
T  3220938 ttttcttcaagaggaccaagccaagaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattct 3220862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 3178870 - 3178946
Alignment:
Q  146 ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattct 222  Q
    ||||| ||||||||||||| |||| |||| || |||||||| ||||||||||| ||||| || || || ||||||||    
T  3178870 ttttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattct 3178946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 3239970 - 3239894
Alignment:
Q  146 ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctggagtgaacattct 222  Q
    ||||| ||||||||||||| |||| |||| || |||||||| ||||||||||| ||||| || || || ||||||||    
T  3239970 ttttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattct 3239894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University