View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_7 (Length: 611)

Name: NF3693_low_7
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_7
NF3693_low_7
[»] chr8 (3 HSPs)
chr8 (6-592)||(30837666-30838252)
chr8 (278-453)||(16054672-16054847)
chr8 (291-381)||(15050799-15050889)
[»] chr6 (5 HSPs)
chr6 (291-426)||(28524011-28524147)
chr6 (48-244)||(28523697-28523893)
chr6 (291-419)||(28237824-28237953)
chr6 (291-355)||(28245174-28245238)
chr6 (74-135)||(28237579-28237640)
[»] scaffold0010 (2 HSPs)
scaffold0010 (292-453)||(235628-235790)
scaffold0010 (52-146)||(171087-171181)
[»] chr2 (6 HSPs)
chr2 (291-435)||(32600789-32600935)
chr2 (33-148)||(36065083-36065198)
chr2 (41-148)||(32601149-32601257)
chr2 (293-352)||(24578763-24578822)
chr2 (298-352)||(19569719-19569773)
chr2 (293-341)||(17628247-17628295)
[»] chr7 (5 HSPs)
chr7 (291-453)||(22384095-22384257)
chr7 (33-131)||(45365119-45365217)
chr7 (308-395)||(45364839-45364926)
chr7 (25-84)||(9698471-9698530)
chr7 (292-368)||(9699175-9699251)
[»] chr1 (7 HSPs)
chr1 (291-401)||(40936522-40936632)
chr1 (42-177)||(21425111-21425248)
chr1 (291-437)||(21424736-21424883)
chr1 (291-390)||(28217006-28217105)
chr1 (56-148)||(24780723-24780813)
chr1 (354-439)||(18235771-18235856)
chr1 (409-453)||(28538541-28538585)
[»] chr5 (8 HSPs)
chr5 (291-436)||(27810052-27810198)
chr5 (295-439)||(4983181-4983326)
chr5 (25-148)||(16993530-16993652)
chr5 (291-364)||(6434907-6434979)
chr5 (74-144)||(6434632-6434702)
chr5 (411-453)||(16988354-16988396)
chr5 (292-352)||(13502347-13502407)
chr5 (291-343)||(16993264-16993316)
[»] scaffold0038 (3 HSPs)
scaffold0038 (291-419)||(37986-38115)
scaffold0038 (291-355)||(45336-45400)
scaffold0038 (74-135)||(37741-37802)
[»] chr4 (4 HSPs)
chr4 (291-436)||(9003241-9003387)
chr4 (332-436)||(27655805-27655910)
chr4 (25-84)||(13564848-13564907)
chr4 (292-368)||(13565552-13565628)
[»] chr3 (5 HSPs)
chr3 (25-146)||(45884587-45884709)
chr3 (353-453)||(25226639-25226740)
chr3 (291-362)||(25227439-25227512)
chr3 (44-136)||(27047952-27048045)
chr3 (294-385)||(25231895-25231989)


Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 592
Target Start/End: Complemental strand, 30838252 - 30837666
Alignment:
Q  6 agtgagatgaagcatgaataataattgaagagtcggatttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcc 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30838252 agtgatatgaagcatgaataataattgaagagtcggatttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatca 30838153  T
Q  106 tttctttctaattctcgatctctaatctctccatctcaattttataacacaagaacatgagtcattgacttttgagagcagccaaaagcataagtgtcag 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  30838152 tttctttctaattctcgatctctaatctctccatttcaattttataacacaagaacatgagtcattgacttttgacggcagccaaaagcataagtgtcag 30838053  T
Q  206 tgtcgtaatgatataatagtttcttaagagtaggttccatatgataatagtagaaatttcaaaagatttattggaggaggatgaagaatataaacattga 305  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30838052 tgacctaatgatataatagtttcttaagagtaggttccatatgataatagtagaaatttcaaaagatttcttggaggaggatgaagaatataaacattga 30837953  T
Q  306 attatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatggatctagtttaaaac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837952 attatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatggatctagtttaaaac 30837853  T
Q  406 cacttggttcacatttcaaagattcatactcgtgatcttttagcacaaaaattaaaatatgtaaatctcctgccttagtaaaattcgctttttcagatat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30837852 cacttggttcacatttcaaagattcatactcgtgatcttttagcacaaaaattaaaatatgtaaatctactgccttagtaaaattcgctttttcagatat 30837753  T
Q  506 gatccttagtaaaattgaaattcgcctttttggttcttccattcgtagatggtaagcctagctactccccgtgccaagaatagcttg 592  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837752 gatccttagtaaaattgaaattcgcctttttagttcttccattcgtagatggtaagcctagctactccccgtgccaagaatagcttg 30837666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 278 - 453
Target Start/End: Original strand, 16054672 - 16054847
Alignment:
Q  278 ggaggaggatgaagaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtag 377  Q
    ||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||| ||| |||||||    
T  16054672 ggaggagaaggaagaatataaatattgaattatgatccatatgtgctattgtgtaaaatatgttctctttagttactaaattcttaagcgtcgagtgtag 16054771  T
Q  378 actttggagcatggatctagtttaaaaccacttggttcacatttcaaagattcatactcgtgatcttttagcacaa 453  Q
    ||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  16054772 actttagggcatggatctagtttataaccacttggttcacatttcaaagatccatactcgtgttctttttgcacaa 16054847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 15050799 - 15050889
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactt 381  Q
    ||||||||||||||||||||||| ||| |  |||||| |  |||| ||| |||| ||||| ||| |||||||||||||||| | |||||||    
T  15050799 gaatataaacattgaattatgattcatgtaggctattatataaaatatgatctctttagtaactgaattctcaagtgtcaaatatagactt 15050889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 28524011 - 28524147
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||||    
T  28524011 gaatataaacattgaattatgatctatgtgtgctattgtgtaaaacatgctctctttaattactaaattctcaagtgtcgaatgtagactttggagcatg 28524110  T
Q  391 gat-ctagtttaaaaccacttggttcacatttcaaag 426  Q
    ||| |||||||| | ||||||| ||||||||||||||    
T  28524111 gatcctagtttagagccacttgattcacatttcaaag 28524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 28523697 - 28523893
Alignment:
Q  48 aactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctctccatctcaatt- 146  Q
    |||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||| ||||| |||||||  | |||||||     
T  28523697 aactcttatatattaagagtcaaaaatcatattattttacctgagtttatgtgtatcctttctttctaattctcaatctccaatctct-aaactcaattg 28523795  T
Q  147 ttataacacaagaacatgagtcattgacttttgagagcagccaaaagcataagtgtcagtgtcgtaatgatataatagtttcttaagagtaggttcca 244  Q
    |  ||||| |||||||  ||||||||||||| || |    |||||||||||| ||||| ||| |||  ||||||||||| || ||| |||||||||||    
T  28523796 tgttaacaaaagaacacaagtcattgactttcgacaaactccaaaagcataaatgtcaatgtagtatagatataatagtctcctaaaagtaggttcca 28523893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 28237824 - 28237953
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||| |||||| |||||| || ||||||||| |||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||    
T  28237824 gaatataaacattaaattataatccatgtgcgctattgtgtaaaacatgctctctttagttactaaattattaagtgtcgaatgtagactttggagcatg 28237923  T
Q  391 gat-ctagtttaaaaccacttggttcacat 419  Q
    ||| |||  ||| | |||||||||||||||    
T  28237924 gatcctaccttagagccacttggttcacat 28237953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 28245174 - 28245238
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttacta 355  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  28245174 gaatataaacattgaattatgatccatgtgtgctattgtgtaaaacatattctctttagttacta 28245238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 28237579 - 28237640
Alignment:
Q  74 tcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctct 135  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  28237579 tcatattattttactcgaatttatgtgtttcctttctttctaattctcaatctttaatctct 28237640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 292 - 453
Target Start/End: Original strand, 235628 - 235790
Alignment:
Q  292 aatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatgg 391  Q
    |||||||||| | ||||||||| ||| |||| | ||||  ||||||||||||| ||| |||||||||||||||||||| || ||||||| ||||||||||    
T  235628 aatataaacacttaattatgattcatgtgtgttgttgtataaaacatgttctctttaattactaaattctcaagtgtcgagcgtagactatggagcatgg 235727  T
Q  392 at-ctagtttaaaaccacttggttcacatttcaaagattcatactcgtgatcttttagcacaa 453  Q
    || ||||||||||  |||||| |||||||||||||||||||||||| || |||||| ||||||    
T  235728 atcctagtttaaagtcacttgattcacatttcaaagattcatactcatgttctttttgcacaa 235790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 171087 - 171181
Alignment:
Q  52 cttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctctccatctcaatt 146  Q
    |||||||||||||| | |||| |||||| |||||| |||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  171087 cttatatattaacactgaaaattcatatgattttatccgagtttatgtgtatactttctttctagttctcaatctctaatctctccatctcaatt 171181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 32600935 - 32600789
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| ||||||||||  |||| |||||||| |||||||||||    
T  32600935 gaatataaacattgaattatgatccatgtgtgttattgtgtaaaacatgttctctttagttaataaattctcatatgtcgagtgtagattttggagcatg 32600836  T
Q  391 gatc-tagttta-aaaccacttggttcacatttcaaagattcatact 435  Q
    |||| |||||||  |  || |||||||||||||||||||| ||||||    
T  32600835 gatcttagtttaggagtcagttggttcacatttcaaagatacatact 32600789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 36065198 - 36065083
Alignment:
Q  33 aagagtcggatttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatc 132  Q
    ||||||| |||||||| |||||||||||||||| |  |||||||||||||||||   || |||| || |||||| ||||| || ||||| ||||||||||    
T  36065198 aagagtcagatttttagctcttatatattaacactagaaagtcatattattttatgtgagtttaagtgtatcctatctttttagttctcaatctctaatc 36065099  T
Q  133 tctccatctcaatttt 148  Q
    |||| |||||||||||    
T  36065098 tctctatctcaatttt 36065083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 32601257 - 32601149
Alignment:
Q  41 gatttttaactcttatatattaacagtcaaaagtcatattattttaccc-gaatttatgtctatcctttctttctaattctcgatctctaatctctccat 139  Q
    |||||||| ||||||||||| |||| |||||||| ||||| ||||||   || ||||||| ||||||||||||  ||||||| |||| ||||||||||||    
T  32601257 gatttttagctcttatatatcaacactcaaaagttatattgttttacagtgagtttatgtgtatcctttcttttcaattctcaatctttaatctctccat 32601158  T
Q  140 ctcaatttt 148  Q
    | |||||||    
T  32601157 cccaatttt 32601149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 24578822 - 24578763
Alignment:
Q  293 atataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagtta 352  Q
    ||||||||||||||||||||||||| |||||| || ||  ||||||||| || |||||||    
T  24578822 atataaacattgaattatgatccatgtgtgctgttttgataaacatgttgtctttagtta 24578763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 19569773 - 19569719
Alignment:
Q  298 aacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagtta 352  Q
    |||||||||||||||||||| ||||||||| ||  ||||||||| || |||||||    
T  19569773 aacattgaattatgatccatgtgtgctattttgataaacatgttgtctttagtta 19569719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 17628247 - 17628295
Alignment:
Q  293 atataaacattgaattatgatccatatgtgctattgtggaaaacatgtt 341  Q
    ||||||||||||||||||||||||| |||||| || ||  |||||||||    
T  17628247 atataaacattgaattatgatccatgtgtgctgttttgataaacatgtt 17628295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 291 - 453
Target Start/End: Original strand, 22384095 - 22384257
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||| |||||||||||||||||||||| ||||||| |||  ||| |||| ||||||||||||||||||||| |  |||||  |||||||||||||    
T  22384095 gaatataaagattgaattatgatccatatgtgttattgtgtaaactatgctctctttagttactaaattctcaagt-ttgagtgttaactttggagcatg 22384193  T
Q  391 gat-ctagtttaaaaccacttggttcacatttcaaagattcatactcgtgatcttttagcacaa 453  Q
    ||| |||  ||| ||||||||| ||||||||| ||||| |||||||| || |||||| ||||||    
T  22384194 gatcctatattagaaccacttgattcacattttaaagactcatactcatgttctttttgcacaa 22384257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 45365217 - 45365119
Alignment:
Q  33 aagagtcggatttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaat 131  Q
    |||||||  |||||||||||||||||||||||| |||||||| |||||||||||  ||| ||||||| ||| |||||||||||||| || |||||||||    
T  45365217 aagagtcatatttttaactcttatatattaacactcaaaagtgatattattttattcgagtttatgtatattctttctttctaattttcaatctctaat 45365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 45364926 - 45364839
Alignment:
Q  308 tatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatggatct 395  Q
    |||||||||| |||||||||||| |||||||||| || ||| | ||||||||||||| |||| |||||| ||||||||||||| ||||    
T  45364926 tatgatccatgtgtgctattgtgtaaaacatgttatctttattaactaaattctcaaatgtcgagtgtaaactttggagcatgaatct 45364839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 9698471 - 9698530
Alignment:
Q  25 aataattgaagagtcggatttttaactcttatatattaacagtcaaaagtcatattattt 84  Q
    ||||||| |||||||  |||| ||||||||||||||||||| ||||||||||||||||||    
T  9698471 aataattcaagagtcatatttataactcttatatattaacactcaaaagtcatattattt 9698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 9699175 - 9699251
Alignment:
Q  292 aatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgt 368  Q
    ||||||| |||||||||||||| ||| |||| | || || |||| ||| |||| |||||||||||| ||| ||||||    
T  9699175 aatataaccattgaattatgattcatgtgtgttgttctgtaaaatatgctctctttagttactaaactcttaagtgt 9699251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 40936632 - 40936522
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||| || |||| |||||||  ||||||||||||||| |||||||| |||||||||||    
T  40936632 gaatataaccattgaattatgatccatgtgtgctattgtgtaaaacttgctctctttagttataaaattctcaagtgtcgagtgtagattttggagcatg 40936533  T
Q  391 gatctagttta 401  Q
     ||||||||||    
T  40936532 aatctagttta 40936522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 21425248 - 21425111
Alignment:
Q  42 atttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaa-ttctcgatctctaatctctccatc 140  Q
    ||||||| ||| |||||||||| | |||||||||||||| ||||| |||| |||||||  ||||||||||||||| || || ||||||||||||||||||    
T  21425248 atttttagctcatatatattaaaactcaaaagtcatattgttttatccgagtttatgtggatcctttctttctaatttttcaatctctaatctctccatc 21425149  T
Q  141 tcaatttt-ataacacaagaacatgagtcattgacttt 177  Q
    ||||||||  |||||||||||||  |||||||||||||    
T  21425148 tcaattttgttaacacaagaacacaagtcattgacttt 21425111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 291 - 437
Target Start/End: Complemental strand, 21424883 - 21424736
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| || ||||||| |||  |||||||| | |||||||||||||||||     
T  21424883 gaatataaacattgaattatgatccatgtgtgctattgtgtagaacatgctctctttggttactagatttccaagtgtcgaatgtagactttggagcata 21424784  T
Q  391 gat-ctagtttaaaaccacttggttcacatttcaaagattcatactcg 437  Q
    ||| |||||||| |   | ||||||||||||||||| || ||||||||    
T  21424783 gatcctagtttagagtgatttggttcacatttcaaatatacatactcg 21424736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 28217105 - 28217006
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||||||| | | ||||| |||||||||||| |||||||| |||| ||  |||||||||||||||||||| | ||||||||||||||||||    
T  28217105 gaatataaacattgaataacgttccatgtgtgctattgtgtaaaacatgctctctttgattactaaattctcaagtgtcgaatgtagactttggagcatg 28217006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 24780723 - 24780813
Alignment:
Q  56 tatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctctccatctcaatttt 148  Q
    |||||||||| ||||||| |||||||||||||| || ||||||| |||| |||||||  ||||||| |||||||   ||||||||||||||||    
T  24780723 tatattaacattcaaaagccatattattttacctgagtttatgtgtatcatttcttttcaattctcaatctcta--gtctccatctcaatttt 24780813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 439
Target Start/End: Original strand, 18235771 - 18235856
Alignment:
Q  354 taaattctcaagtgtcaagtgtagactttggagcatggat-ctagtttaaaaccacttggttcacatttcaaagattcatactcgtg 439  Q
    ||||||||||||||| | |||||||||||||| |||| || |||||||| | ||  |||||||||||||||||||| ||||||||||    
T  18235771 taaattctcaagtgtga-gtgtagactttggatcatgaatactagtttagagccgattggttcacatttcaaagatccatactcgtg 18235856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 28538585 - 28538541
Alignment:
Q  409 ttggttcacatttcaaagattcatactcgtgatcttttagcacaa 453  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||    
T  28538585 ttggttcacatttcaaagattcatacttgtgttcttctagcacaa 28538541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 27810198 - 27810052
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||| |||||| ||| || |||| ||||||| ||||||||||||  ||   ||||||||||||||||||| ||||||||||||||||||||    
T  27810198 gaatataaacattaaattataatctatttgtgttattgtgtaaaacatgttctttttgactactaaattctcaagtgtcgagtgtagactttggagcatg 27810099  T
Q  391 gat-ctagtttaaaaccacttggttcacatttcaaagattcatactc 436  Q
     ||  || |||| |  || ||||||||||||||||||||||||||||    
T  27810098 tatagtaatttagattcatttggttcacatttcaaagattcatactc 27810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 4983326 - 4983181
Alignment:
Q  295 ataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatggat- 393  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||| |||| ||| ||| |||||||| ||||||| ||||||||||||||||| || ||     
T  4983326 ataaacattgagttatgattcatatgtgctaatgtgtaaaacatgctctctttaattaataaattcttaagtgtcgagtgtagactttggagcttgaatc 4983227  T
Q  394 ctagtttaaaaccacttggttcacatttcaaagattcatactcgtg 439  Q
    ||| |||| |   | |||||||||||||||||||| ||||||||||    
T  4983226 ctaatttagagttaattggttcacatttcaaagatccatactcgtg 4983181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 16993652 - 16993530
Alignment:
Q  25 aataattgaagagtcggatttttaactctt-atatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttctttctaattctcga 123  Q
    ||||||| | ||||| | |||| ||||||| ||||||||||| |||||||||||  |||||||| ||| ||||||| |||| |||||||||||||||| |    
T  16993652 aataatttatgagtctggttttaaactctttatatattaacactcaaaagtcat--tattttactcgagtttatgtgtatcatttctttctaattctcaa 16993555  T
Q  124 tctctaatctctccatctcaatttt 148  Q
    ||| |||| ||||  ||||||||||    
T  16993554 tctttaatgtctctgtctcaatttt 16993530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 6434907 - 6434979
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaa 364  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||| |||| |||| ||||||| |||||||||||    
T  6434907 gaatataaacatt-aattatgatccatgtgtgctattgtgtaaatcatgctctctttagttattaaattctcaa 6434979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 6434632 - 6434702
Alignment:
Q  74 tcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctctccatctcaa 144  Q
    |||||||||||||||||| ||||||| |||| ||||||   ||||||| ||||||||| |  |||||||||    
T  6434632 tcatattattttacccgagtttatgtgtatcatttcttatcaattctcaatctctaattttcccatctcaa 6434702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 16988396 - 16988354
Alignment:
Q  411 ggttcacatttcaaagattcatactcgtgatcttttagcacaa 453  Q
    |||||||||||||||||| |||||||||| |||||| ||||||    
T  16988396 ggttcacatttcaaagatccatactcgtgttctttttgcacaa 16988354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 13502347 - 13502407
Alignment:
Q  292 aatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagtta 352  Q
    |||||||||||||||||||||||||| |||| | || ||  ||||||||| || |||||||    
T  13502347 aatataaacattgaattatgatccatgtgtgttgttttgataaacatgttgtctttagtta 13502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 16993316 - 16993264
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttct 343  Q
    |||||||| |||| ||||||||| ||| |||||||||||| ||||||| ||||    
T  16993316 gaatataagcattaaattatgattcatgtgtgctattgtgtaaaacatattct 16993264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 37986 - 38115
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||||||| |||||| |||||| || ||||||||| |||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||    
T  37986 gaatataaacattaaattataatccatgtgcgctattgtgtaaaacatgctctctttagttactaaattattaagtgtcgaatgtagactttggagcatg 38085  T
Q  391 gat-ctagtttaaaaccacttggttcacat 419  Q
    ||| |||  ||| | |||||||||||||||    
T  38086 gatcctaccttagagccacttggttcacat 38115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 45336 - 45400
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttacta 355  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  45336 gaatataaacattgaattatgatccatgtgtgctattgtgtaaaacatattctctttagttacta 45400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 37741 - 37802
Alignment:
Q  74 tcatattattttacccgaatttatgtctatcctttctttctaattctcgatctctaatctct 135  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  37741 tcatattattttactcgaatttatgtgtttcctttctttctaattctcaatctttaatctct 37802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 9003387 - 9003241
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatg 390  Q
    ||||||||| |||| ||||||||  |  ||||  |||||  ||||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||     
T  9003387 gaatataaagattggattatgatttaggtgtgtaattgtataaaacatgttctctttagttactaaattttcaagtgtcgagtgttgactttggagcata 9003288  T
Q  391 ga-tctagtttaaaaccacttggttcacatttcaaagattcatactc 436  Q
    || ||||  ||| ||||||||| ||||||||||||||||| ||||||    
T  9003287 gattctaaattagaaccacttgattcacatttcaaagatttatactc 9003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 332 - 436
Target Start/End: Original strand, 27655805 - 27655910
Alignment:
Q  332 aaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttggagcatgg-atctagtttaaaaccacttggttcacatttcaaagattc 430  Q
    |||| ||||| || |||||||||||||||||||||||| |||||||||||||||||| || | ||||| || | |||||||||||||||||||||||| |    
T  27655805 aaaaaatgttttctttagttactaaattctcaagtgtcgagtgtagactttggagcacggaacctagtgtagagccacttggttcacatttcaaagatcc 27655904  T
Q  431 atactc 436  Q
    ||||||    
T  27655905 atactc 27655910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 13564848 - 13564907
Alignment:
Q  25 aataattgaagagtcggatttttaactcttatatattaacagtcaaaagtcatattattt 84  Q
    ||||||| |||||||  |||| ||||||||||||||||||| ||||||||||||||||||    
T  13564848 aataattcaagagtcatatttataactcttatatattaacactcaaaagtcatattattt 13564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 13565552 - 13565628
Alignment:
Q  292 aatataaacattgaattatgatccatatgtgctattgtggaaaacatgttctccttagttactaaattctcaagtgt 368  Q
    ||||||| |||||||||||||| ||| |||| | || || |||| ||| |||| |||||||||||| ||| ||||||    
T  13565552 aatataaccattgaattatgattcatgtgtgttgttctgtaaaatatgctctctttagttactaaactcttaagtgt 13565628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 45884709 - 45884587
Alignment:
Q  25 aataattgaagagtcggatttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcctttc-tttctaattctcga 123  Q
    ||||||||||||||  || ||||  ||| |||||||||||| |||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||| |    
T  45884709 aataattgaagagttcgagtttttgctcgtatatattaacactcaaaaatcatattattttacccgagtttatgtgtttcctttcttttctaattctcaa 45884610  T
Q  124 tctctaatctctccatctcaatt 146  Q
    | | ||||||||| |||||||||    
T  45884609 tttataatctctcaatctcaatt 45884587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 25226740 - 25226639
Alignment:
Q  353 ctaaattctcaagtgtcaagtgtagactttggagcatggatc-tagtttaaaaccacttggttcacatttcaaagattcatactcgtgatcttttagcac 451  Q
    ||||||| ||||||||| |||||||| |||| |||||||||| |  |||| |  |||||| ||||||||||||||||||||||||||| |||||| ||||    
T  25226740 ctaaattttcaagtgtcgagtgtagattttgaagcatggatcctcatttagactcacttgattcacatttcaaagattcatactcgtgttctttttgcac 25226641  T
Q  452 aa 453  Q
    ||    
T  25226640 aa 25226639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 25227512 - 25227439
Alignment:
Q  291 gaatataaacattgaattatgatccatatgtg--ctattgtggaaaacatgttctccttagttactaaattctc 362  Q
    ||||||||||||| ||||||||||||||||||   ||||||| ||||||||||||| ||||||| |||||||||    
T  25227512 gaatataaacattaaattatgatccatatgtgatatattgtgtaaaacatgttctctttagttaataaattctc 25227439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 27048045 - 27047952
Alignment:
Q  44 ttttaactcttatatattaacagtcaaaagtcatattattttacccgaatttatgtctatcc-tttctttctaattctcgatctctaatctctc 136  Q
    ||||| |||||||||||||||| | |||||||||||||||||| || | || |||| || || |||||||||||||||| ||| ||||||||||    
T  27048045 ttttagctcttatatattaacacttaaaagtcatattattttatccaagttaatgtatacccttttctttctaattctcaatcactaatctctc 27047952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 25231989 - 25231895
Alignment:
Q  294 tataaacattgaattatgatccatatgtgctattgtgg---aaaacatgttctccttagttactaaattctcaagtgtcaagtgtagactttgga 385  Q
    ||||||||| |||||| ||||||| ||||||||||| |   |||||||| |||| ||||||| |||||||| ||||||  |||||||||||||||    
T  25231989 tataaacatcgaattacgatccatgtgtgctattgttgtgtaaaacatgctctctttagttattaaattcttaagtgttgagtgtagactttgga 25231895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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