View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_9 (Length: 576)
Name: NF3693_low_9
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 32647777 - 32647222
Alignment:
| Q |
17 |
caacttgggcgccctatagagcgacctcaataatttcaaggaattgtttttatgtgtgtgttcgatatatataggc------ccggaaaacatatctaaa |
110 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32647777 |
caacttgggcgccctatagagcaaccttaataatttcaaggaattatttttatgtgtgtgttcgatatatataggcataggcccggaaaacatatctaaa |
32647678 |
T |
|
| Q |
111 |
ctttttattttctattgagtgcaaccatcttataacatttgaatgattagagcagcattattaagttgaagtatattgtgaaaattgttttctctcaggt |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647677 |
ctttttattttctattgagtgcaaccatcttataatatttgaatgattagagcagcattattaagttgaagtatattgtgaaaattgttttctctcaggt |
32647578 |
T |
|
| Q |
211 |
tcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaagcttg |
310 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647577 |
tcataagattccagagacatttaagtcagcaacagattacaacaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaagcttg |
32647478 |
T |
|
| Q |
311 |
tctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatc |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647477 |
tctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcattcagttccatc |
32647378 |
T |
|
| Q |
411 |
ataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctattacatacattaa |
510 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647377 |
ataccatacggttggagagtacaactgaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctattacatacattaa |
32647278 |
T |
|
| Q |
511 |
gccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
566 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647277 |
gccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
32647222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 85 - 435
Target Start/End: Original strand, 32566703 - 32567053
Alignment:
| Q |
85 |
atataggcccggaaaacatatctaaactttttattttctattgagtgcaaccatcttataacatttgaatgattagagcagcattattaagttgaagtat |
184 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32566703 |
atataggcccagaaaacatatctaaactttttattttctattgagtgcaaccatcttataacatttgaatgattagagcagcactattaagttgaagtat |
32566802 |
T |
|
| Q |
185 |
attgtgaaaattgttttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32566803 |
attgtgaaaattgttttctctcaggttcataagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctattgtttgaggaaa |
32566902 |
T |
|
| Q |
285 |
cacgcgctgatttatcttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||| |||||| |||||||||| |||||| ||| |||||| |
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| T |
32566903 |
cacgcgctgatttatcttcaagcttgtctggtgtgtctcaagctgctctttgtgaaatcaagaatgtcgaacacagcaagcagttgaaacttcgcaaagc |
32567002 |
T |
|
| Q |
385 |
tcaaaatcaattcattcagttccatcataccatacggttggagagtacaac |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
32567003 |
tcaaaatcaattcattcagttccatcataccatatggttgaagagtacaac |
32567053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 200 - 558
Target Start/End: Complemental strand, 32527063 - 32526711
Alignment:
| Q |
200 |
ttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttat |
299 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| |
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| T |
32527063 |
ttctcttaggttcataagataccagagacatttaagtcagcaacagattacaagaactctttcattcctctgttgtgtgaggaaacgcgcactgatttat |
32526964 |
T |
|
| Q |
300 |
cttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcat |
399 |
Q |
| |
|
|||||||||||||||| ||||| | |||| | ||||||||||| |||||| ||| |||||||||||| || ||| |||||||||||| || |||| |
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| T |
32526963 |
cttcaagcttgtctggtgtgtctcgagctcccatttgtgaaatcaagaaagttataaaaagcaagcaattgcaacttcccaaagctcaaaagcatttcaa |
32526864 |
T |
|
| Q |
400 |
tcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctatt |
499 |
Q |
| |
|
||||||| ||||| |||| |||| ||||||| || | | || | ||| |||||||| ||||||||||| | |||||||| |||||| | |
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|
| T |
32526863 |
acagttccgtcataagatacagttgaagagtac------attttacagtgtggaagatggtggagattatgaacctggaagtggagatctcattgctttc |
32526770 |
T |
|
| Q |
500 |
acatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatat |
558 |
Q |
| |
|
||| |||||| || ||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
32526769 |
acaaacattagacccaaaagcttagatgacttgaacacactcaaaagtccctaccatat |
32526711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 200 - 566
Target Start/End: Complemental strand, 32533559 - 32533187
Alignment:
| Q |
200 |
ttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttat |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| || ||||| ||||||||||||||| | ||||| |||||||||||||||| | ||||||||| |
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|
| T |
32533559 |
ttctctcaggttcataagattccagagacgtttaagtctgccacagaatacaagaactcttttgtacctctattgtttgaggaaacacacactgatttat |
32533460 |
T |
|
| Q |
300 |
cttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaa------tttcacaaagctcaaaatca |
393 |
Q |
| |
|
|||||||||||| || || || |||||| || ||||||| ||| || ||| |||| | |||| |||| ||| |||| ||||||||| |
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| T |
32533459 |
cttcaagcttgtttgctgtctctcaagctcctttttgtgagatcaataatgtccaaaaaactgcacaatggaaactttccattccaaaagatcaaaatca |
32533360 |
T |
|
| Q |
394 |
attcattcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttatt |
493 |
Q |
| |
|
|||||| |||||||||||| ||||||| | |||||||||| ||||||||| || |||| | | ||||| |||| |||||| ||||| ||||| ||| |
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|
| T |
32533359 |
attcatacagttccatcatgacatacggctaaagagtacaactgaatctgatgaagttgaagacgttggaaattataaacctgtgtcaggggatctcatt |
32533260 |
T |
|
| Q |
494 |
gctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
566 |
Q |
| |
|
||| | ||| |||||| ||| ||||||||||||||||||||||||||| | || ||||||| ||| ||||||| |
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|
| T |
32533259 |
gctttcacacacattaggcctaaaagcttaaatgacttgaacacactccaaagcccctaccgtatcgcctatg |
32533187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 32567057 - 32567156
Alignment:
| Q |
466 |
ttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctat |
565 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
32567057 |
ttatgaacctgcgtcaggagatcttattgctattacatacatcaggccaaaaagcttaaatgacttgaacacacttaacagtccctaccatattgcctat |
32567156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 32616089 - 32615951
Alignment:
| Q |
218 |
attccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaagcttgtctggcg |
317 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||||||||||| || ||||||| ||| | |||||||||| | |||| |||| ||||| ||||| || | |
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|
| T |
32616089 |
attcctgagacctttaattcaccaacagattacaagaactccttcattcctccattgctggaggaaacacactctgacttatattcaaacttgttaggag |
32615990 |
T |
|
| Q |
318 |
tgtcacaagcttctctttgtgaaatctggaaagtcgaaa |
356 |
Q |
| |
|
|||| || ||| || |||||||| ||| |||||| |||| |
|
|
| T |
32615989 |
tgtctcatgctcctttttgtgaagtcttgaaagttgaaa |
32615951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 26376799 - 26376864
Alignment:
| Q |
240 |
caacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaa |
305 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| || |||||| ||||| | |||| |||| ||||| |
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|
| T |
26376799 |
caacagattacaagaactcctttatgcctctgctgcttgagggaacacactctgacttatattcaa |
26376864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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