View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3694_high_1 (Length: 643)

Name: NF3694_high_1
Description: NF3694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3694_high_1
NF3694_high_1
[»] chr6 (5 HSPs)
chr6 (427-576)||(33050640-33050789)
chr6 (161-287)||(33032166-33032291)
chr6 (491-576)||(33031989-33032074)
chr6 (166-267)||(33032457-33032558)
chr6 (166-261)||(33050800-33050895)
[»] chr1 (3 HSPs)
chr1 (161-289)||(38903494-38903621)
chr1 (166-281)||(38903860-38903975)
chr1 (166-281)||(38904196-38904311)
[»] chr8 (1 HSPs)
chr8 (167-267)||(43522008-43522107)
[»] chr4 (2 HSPs)
chr4 (167-285)||(53017377-53017497)
chr4 (167-281)||(53017180-53017293)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 8e-72; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 427 - 576
Target Start/End: Complemental strand, 33050789 - 33050640
Alignment:
Q  427 cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggcctcatttagaagatttgattagtctacat 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  33050789 cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggccttattgagaagattagattagtctacat 33050690  T
Q  527 gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050689 gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc 33050640  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 33032291 - 33032166
Alignment:
Q  161 cattgcctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaac 260  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  || |||||||||||||||||||||||||    
T  33032291 cattgtctcagacatccaaggaaggataaaa-cagcataaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaac 33032193  T
Q  261 aagccttcgaaatatcatcatagacaa 287  Q
    |||||||| | ||||||||||||||||    
T  33032192 aagccttcaagatatcatcatagacaa 33032166  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 491 - 576
Target Start/End: Complemental strand, 33032074 - 33031989
Alignment:
Q  491 atttggcctcatttagaagatttgattagtctacatgttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc 576  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  33032074 atttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatcattggc 33031989  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 33032558 - 33032457
Alignment:
Q  166 cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttctcgggtggccactgcgaatgttttgagaaacaagc 264  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||| |||||| | |||||| |||  || |||||||||||||||||||||||||||||    
T  33032558 cctcagacatccaaggaaggatacag-cagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagc 33032460  T
Q  265 ctt 267  Q
    |||    
T  33032459 ctt 33032457  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 33050895 - 33050800
Alignment:
Q  166 cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttctcgggtggccactgcgaatgttttgagaaaca 261  Q
    |||||| |||||||||||||||| |  |||||| |||||||||||  |||||| | |||||| |||  || ||||||||||||||||||||||||||    
T  33050895 cctcaggcatccaaggaaggatagag-cagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 33050800  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 38903621 - 38903494
Alignment:
Q  161 cattgcctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaac 260  Q
    ||||| ||||||||||||||||||||||||| |||||  | ||||||||||||||||| ||||||| |||  || |||||||||||||||||||||||||    
T  38903621 cattgtctcagacatccaaggaaggataaaa-cagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaac 38903523  T
Q  261 aagccttcgaaatatcatcatagacaata 289  Q
    |||||||| | ||||||||||||||||||    
T  38903522 aagccttcaagatatcatcatagacaata 38903494  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 38903975 - 38903860
Alignment:
Q  166 cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacg-cgaaagttctcgggtggccactgcgaatgttttgagaaacaagc 264  Q
    ||||||||||||||||||||| || | |||||| |||||||||||| |||||| | ||||||||||  || |||||||||||||||||||||||||||||    
T  38903975 cctcagacatccaaggaagga-aatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagc 38903877  T
Q  265 cttcgaaatatcatcat 281  Q
    ||| ||  |||||||||    
T  38903876 cttagatttatcatcat 38903860  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 38904311 - 38904196
Alignment:
Q  166 cctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaacaagcc 265  Q
    ||||||||||||||||||||| |  ||| |||| | ||||||||||||||||| ||||||| | |  ||  |||||||||||||||||||||||||||||    
T  38904311 cctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaaggcgaaagctattaggcagccactgcgaatgttttgagaaacaagcc 38904212  T
Q  266 ttcgaaatatcatcat 281  Q
    || ||  |||||||||    
T  38904211 ttagatttatcatcat 38904196  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 43522107 - 43522008
Alignment:
Q  167 ctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaacaagcct 266  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  43522107 ctcagacatccaaggaaggataaag-cagcattaactctcaagcctggcgaaggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 43522009  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 53017377 - 53017497
Alignment:
Q  167 ctcagacatccaaggaaggataaaa--acagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaacaagc 264  Q
    |||||||||||||||||||| ||||  ||||||| | ||||||||||||||||| ||||||| ||| ||  |||||||||||||||||||||||||||||    
T  53017377 ctcagacatccaaggaaggaaaaaaaaacagcattagctctcaagcctggcgaaggcgaaagctcttggtcggccactgcgaatgttttgagaaacaagc 53017476  T
Q  265 cttcgaaatatcatcatagac 285  Q
    |||   |||||||||| ||||    
T  53017477 cttaataatatcatcacagac 53017497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 53017180 - 53017293
Alignment:
Q  167 ctcagacatccaaggaaggataaaaacagcataaactctcaagcctggcgaacgcgaaagttctcgggtggccactgcgaatgttttgagaaacaagcct 266  Q
    ||||||||||||||||||||||||  |||||  | ||||||||||||||||| ||||||| |||  || |||||||||||||||||||||||||||||||    
T  53017180 ctcagacatccaaggaaggataaag-cagcactagctctcaagcctggcgaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 53017278  T
Q  267 tcgaaatatcatcat 281  Q
    | | | |||||||||    
T  53017279 ttggattatcatcat 53017293  T

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