View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3694_high_5 (Length: 227)
Name: NF3694_high_5
Description: NF3694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3694_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 40050697 - 40050892
Alignment:
| Q |
16 |
ccaactccatcgacacccccagctagcgactgtccaccctcagaccctacaagcccgacaacaccctcggacccaacaccatcaacaccgtcaaaccctc |
115 |
Q |
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| T |
40050697 |
ccaactccatcgacacccccagctagcgactgtccaccctcagaccctacaagcccgacaacaccctcggccccaacaccatcaacaccgtcaaaccctc |
40050796 |
T |
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| Q |
116 |
cctcaggagatggagggtactataactcaccaccacaagatcctacaagcccaacaacaccctcaactccaacaacgccatcaaacccaccatcag |
211 |
Q |
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| T |
40050797 |
cctcaggagatggagggtactataactcaccaccacaagatcctacaagcccaacaacaccctcaactccaacaacgccatcaaacccaccatcag |
40050892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 40051081 - 40051135
Alignment:
| Q |
127 |
ggagggtactataactcaccaccacaagatcctacaagcccaacaacaccctcaa |
181 |
Q |
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| T |
40051081 |
ggagggtactataactcaccaccacaagaccctataacccctacaacaccatcaa |
40051135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 40051273 - 40051327
Alignment:
| Q |
127 |
ggagggtactataactcaccaccacaagatcctacaagcccaacaacaccctcaa |
181 |
Q |
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||||||||||| ||||||||||||||||| |||| || |||||||||||| |||| |
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| T |
40051273 |
ggagggtactacaactcaccaccacaagaccctataaccccaacaacaccatcaa |
40051327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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