View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3694_low_1 (Length: 720)
Name: NF3694_low_1
Description: NF3694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3694_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 21 - 452
Target Start/End: Original strand, 35929185 - 35929616
Alignment:
| Q |
21 |
caagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35929185 |
caagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttcttcatcttatt |
35929284 |
T |
|
| Q |
121 |
ctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaa |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929285 |
ctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaa |
35929384 |
T |
|
| Q |
221 |
agaaacaagagaacgatgacactagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccc |
320 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929385 |
agaaacaagagaacgatgacattagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccc |
35929484 |
T |
|
| Q |
321 |
tttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctatcttattgttgcc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35929485 |
tttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctaacttattgttgcc |
35929584 |
T |
|
| Q |
421 |
gtttatgcagttgtactgtatcttcatcacag |
452 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
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|
| T |
35929585 |
gtttatgcacttgtactgtatcttcatcacag |
35929616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 35935828 - 35936261
Alignment:
| Q |
21 |
caagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttatt |
120 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||| | ||||| | |||||| |||||||||||||||||||| |||| |||||| || |
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|
| T |
35935828 |
caagtttatcagcttgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatcttgtt |
35935927 |
T |
|
| Q |
121 |
ctcaacttggtttccatatat-cttagtttct-atct----atttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggca |
214 |
Q |
| |
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|| || ||||||| ||||| || ||||||| |||| ||||||||||| ||||||||| | | || | | ||||||||||||| ||||||| || |
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| T |
35935928 |
cttaagttggttttg-tatatactaagtttcttatcttactatttatagataaaaaacagtggcaattttgcatgacttgttttgttgttgttggag-ca |
35936025 |
T |
|
| Q |
215 |
tgtgaaagaaacaagagaacgatgacactagtattgac-------caggcaatgatcagccggctgattt-aatatagtttctccttgaatgtaatggat |
306 |
Q |
| |
|
||||||||||||||||| ||| ||| || ||||||| || |||| ||||||||||||| ||| ||| |||||||| |||||||| ||||||| |
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|
| T |
35936026 |
tgtgaaagaaacaagagtgtgataacattactattgactactgaccatgcaa-gatcagccggctggttttaatttagtttcttcttgaatgcaatggat |
35936124 |
T |
|
| Q |
307 |
tgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctct |
406 |
Q |
| |
|
|||| |||||||||| ||| |||| |||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||| ||| |||||| |
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|
| T |
35936125 |
tgtctttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactttgaaagttaatg----atatactttttcctct |
35936220 |
T |
|
| Q |
407 |
atcttattgttgccgtttatgcagttgtactgtatcttcat |
447 |
Q |
| |
|
| |||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
35936221 |
aacttattgttgtggttgatgcagttgtactgtatcttcat |
35936261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 35916246 - 35916641
Alignment:
| Q |
23 |
agtttatcagtttgactagctttgctatatggaaaaataaccaaaaaact---cacgctgagtagtaaacaagcataaagagaaaccttctccatcttat |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||| |||||| | |
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|
| T |
35916246 |
agtttatcagcttgactagctttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaaccttcttcatcttgt |
35916345 |
T |
|
| Q |
120 |
tctcaacttggtttccatatatctta-gtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtg---gttggaggcat |
215 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| |||||||||||| |||||| ||| | | || ||| ||| ||| ||||| ||||||| ||| |
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|
| T |
35916346 |
tctcaacttggtttcaatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttcttgttggagccat |
35916445 |
T |
|
| Q |
216 |
gtgaaagaaacaagagaacgatgaca-ctagtattga---------------ccaggcaatgatcagccggctga-tttaatatagtttct---ccttga |
295 |
Q |
| |
|
||||||||||||||||| ||| ||| ||| ||||| ||| ||| ||||||||||||| |||||| |||||||| |||||| |
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|
| T |
35916446 |
gtgaaagaaacaagagagagataacatctaccattgaggcattgaccaatgtccatgcattgatcagccggctatgtttaatttagtttcttctccttga |
35916545 |
T |
|
| Q |
296 |
atgtaatg-----gattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
386 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |
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|
| T |
35916546 |
atgtaatgtaagggattgtcattgtttccctttttctagaatcatatcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 35911856 - 35912013
Alignment:
| Q |
20 |
acaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttat |
119 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
35911856 |
acaagtttatcagcttgactagctttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttcttcatcttgt |
35911955 |
T |
|
| Q |
120 |
tctcaacttggtttccatatatc-ttagtttctatctatttatagatacaaaacagtg |
176 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||||| |||||||||||| ||||||||| |
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|
| T |
35911956 |
tctcaacttggcttcaatatatcataagtttctaactatttatagatgaaaaacagtg |
35912013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 35941380 - 35941497
Alignment:
| Q |
23 |
agtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattct |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35941380 |
agtttatcagcttgactagctttgctatatggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttctccatcttgttct |
35941479 |
T |
|
| Q |
123 |
caacttggtttccatata |
140 |
Q |
| |
|
||||||| |||| ||||| |
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|
| T |
35941480 |
caacttgatttctatata |
35941497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 35922515 - 35922658
Alignment:
| Q |
23 |
agtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattct |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||| |||||| |||| |
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|
| T |
35922515 |
agtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttct |
35922614 |
T |
|
| Q |
123 |
caacttggtttccatatatc-ttagtttctatctatttatagat |
165 |
Q |
| |
|
|||||||||||| | ||||| | |||||||| | |||||||||| |
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|
| T |
35922615 |
caacttggtttcaacatatcataagtttctaacaatttatagat |
35922658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 293 - 431
Target Start/End: Original strand, 35922772 - 35922909
Alignment:
| Q |
293 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
389 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||| ||| |||||| |
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|
| T |
35922772 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatg--- |
35922868 |
T |
|
| Q |
390 |
aatatattttgtcctctatcttattgttgccgtttatgcagt |
431 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
35922869 |
-atatatttgttcctctaacttattgttgtggtttatgcagt |
35922909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 35912129 - 35912219
Alignment:
| Q |
298 |
gtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
386 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| ||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
35912129 |
gtaatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg |
35912219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 35941632 - 35941721
Alignment:
| Q |
286 |
ttctccttgaatgtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
375 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35941632 |
ttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttagcactttgtaattaacttt |
35941721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 462 - 709
Target Start/End: Original strand, 37200210 - 37200457
Alignment:
| Q |
462 |
gttcactgcatacaaagtttcctttaattgccagatatttcataagataaaagatttcaacatttaccactcacttctgaaagttatttcttcccttcca |
561 |
Q |
| |
|
|||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37200210 |
gttcactgtatacaatgtattctttaattgccagatatttcataagataaaagatttcaacatttaccactcacttctgaaagttatttcttcccttcca |
37200309 |
T |
|
| Q |
562 |
tctaaatttccaaacatagactaaaatgtgggccatcaaagtataggatggaccagtagttgtatcaaagtcaactcaaaggcaaagtggatgtgtgggt |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200310 |
tctaaatttccaaacatagactaaaatgtgggccatcaaagtataggatggaccagtagttgtatcaaagtcaactcaaaggcaaagtggatgtgtgggt |
37200409 |
T |
|
| Q |
662 |
cccttttcacaccaacatgtcaagttgccaacatgaatgtctgttcat |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37200410 |
cccttttcacaccaacatgtcaagttgccaacatgaatgtctgttcat |
37200457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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