View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3694_low_4 (Length: 308)

Name: NF3694_low_4
Description: NF3694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3694_low_4
NF3694_low_4
[»] chr8 (13 HSPs)
chr8 (6-175)||(41777207-41777376)
chr8 (180-297)||(36189290-36189406)
chr8 (180-294)||(30432416-30432530)
chr8 (180-294)||(18184630-18184744)
chr8 (178-297)||(10203738-10203858)
chr8 (180-294)||(12665421-12665537)
chr8 (180-294)||(42162675-42162790)
chr8 (178-294)||(33726088-33726205)
chr8 (180-294)||(31318882-31318997)
chr8 (188-294)||(44081857-44081964)
chr8 (180-294)||(43186104-43186218)
chr8 (178-297)||(3690600-3690719)
chr8 (230-297)||(38845073-38845139)
[»] chr1 (7 HSPs)
chr1 (180-294)||(34307137-34307252)
chr1 (180-294)||(2509101-2509216)
chr1 (182-294)||(39249864-39249977)
chr1 (180-294)||(28647430-28647544)
chr1 (182-294)||(19258674-19258786)
chr1 (180-290)||(46901734-46901845)
chr1 (178-292)||(9642864-9642978)
[»] chr4 (12 HSPs)
chr4 (182-294)||(35544989-35545102)
chr4 (180-297)||(44275780-44275897)
chr4 (178-297)||(21390953-21391072)
chr4 (180-294)||(6112707-6112821)
chr4 (180-294)||(49243892-49244006)
chr4 (180-294)||(3672351-3672466)
chr4 (180-278)||(7217858-7217957)
chr4 (180-294)||(28093095-28093210)
chr4 (180-294)||(46192436-46192551)
chr4 (180-294)||(45829257-45829371)
chr4 (178-294)||(51038840-51038958)
chr4 (178-270)||(52191198-52191290)
[»] chr7 (23 HSPs)
chr7 (180-294)||(42220963-42221077)
chr7 (180-294)||(34828142-34828256)
chr7 (177-294)||(36346561-36346678)
chr7 (180-294)||(28307494-28307609)
chr7 (180-294)||(45782659-45782774)
chr7 (180-294)||(26972202-26972317)
chr7 (180-294)||(34108503-34108618)
chr7 (180-294)||(46475101-46475216)
chr7 (180-294)||(5811163-5811277)
chr7 (180-294)||(31148367-31148481)
chr7 (180-273)||(29953571-29953665)
chr7 (179-294)||(7699881-7699997)
chr7 (179-294)||(7700079-7700195)
chr7 (179-294)||(7700277-7700393)
chr7 (179-294)||(7700475-7700591)
chr7 (180-293)||(13108226-13108338)
chr7 (182-294)||(30887777-30887890)
chr7 (182-297)||(21807324-21807439)
chr7 (180-294)||(23980208-23980322)
chr7 (180-297)||(36957503-36957619)
chr7 (229-294)||(15020357-15020421)
chr7 (242-290)||(20086690-20086738)
chr7 (180-255)||(42950036-42950111)
[»] chr3 (17 HSPs)
chr3 (180-294)||(30735495-30735609)
chr3 (180-294)||(51339783-51339897)
chr3 (180-297)||(21559635-21559753)
chr3 (178-294)||(46111941-46112058)
chr3 (180-279)||(29472901-29473000)
chr3 (180-294)||(34749897-34750012)
chr3 (180-297)||(48200759-48200877)
chr3 (182-294)||(36749483-36749596)
chr3 (180-294)||(36370337-36370452)
chr3 (180-294)||(44000066-44000181)
chr3 (180-297)||(39467101-39467218)
chr3 (181-294)||(22894757-22894870)
chr3 (178-294)||(38231370-38231486)
chr3 (228-291)||(53638215-53638278)
chr3 (178-290)||(39072276-39072383)
chr3 (242-297)||(50966204-50966256)
chr3 (242-297)||(51069339-51069391)
[»] chr5 (14 HSPs)
chr5 (180-297)||(31800632-31800749)
chr5 (179-294)||(1815618-1815730)
chr5 (178-294)||(39371004-39371121)
chr5 (178-294)||(2237353-2237470)
chr5 (180-294)||(40887941-40888056)
chr5 (180-294)||(13347205-13347320)
chr5 (180-294)||(14831621-14831736)
chr5 (180-294)||(42683676-42683791)
chr5 (183-294)||(27553376-27553487)
chr5 (235-294)||(9408094-9408153)
chr5 (228-294)||(17225394-17225460)
chr5 (182-271)||(19124474-19124563)
chr5 (179-297)||(41003849-41003966)
chr5 (180-260)||(19596067-19596148)
[»] chr2 (11 HSPs)
chr2 (180-294)||(44958190-44958305)
chr2 (180-294)||(16089899-16090012)
chr2 (180-294)||(33732646-33732760)
chr2 (183-294)||(3830900-3831011)
chr2 (180-294)||(37498862-37498979)
chr2 (180-294)||(6376238-6376352)
chr2 (228-294)||(14573072-14573138)
chr2 (178-294)||(41188846-41188963)
chr2 (180-294)||(36315638-36315753)
chr2 (179-294)||(37914235-37914350)
chr2 (237-294)||(24137149-24137206)
[»] scaffold0062 (1 HSPs)
scaffold0062 (178-294)||(6795-6912)
[»] chr6 (6 HSPs)
chr6 (180-294)||(13697645-13697759)
chr6 (180-294)||(3986905-3987019)
chr6 (181-294)||(14023011-14023124)
chr6 (180-294)||(3118046-3118161)
chr6 (180-294)||(24208521-24208635)
chr6 (180-294)||(15345659-15345773)
[»] scaffold0043 (1 HSPs)
scaffold0043 (180-294)||(87162-87278)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 41777376 - 41777207
Alignment:
Q  6 agtaacatcactatggaaataaacatctgcttagattagctttaacttgacaaatacaaaaaggttaaattagtgattcagctatttaggttagtttaat 105  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  41777376 agtaacatcactatggaaataaacatctgcttaggttagctttaacttgacaaatacaaaaatgttaaattagtaattcagctatttaggttagtttaat 41777277  T
Q  106 tgcacttgtattgtaatttaacatctattcacaatatgctctgaaatgagggtatgcatctcctattatg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41777276 tgcacttgtattgtaatttaacatctattcacaatatgctctgaaatgagggtatgcatctcctattatg 41777207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 36189406 - 36189290
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |  |||| |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacac-ccatatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  280 atatcttctttcaatatt 297  Q
    || |||||||||||||||    
T  36189307 atctcttctttcaatatt 36189290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 30432530 - 30432416
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    |||||||||| | |||||||| ||||||||||||| |||||||| || |||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  30432430 atctcttctttcaat 30432416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 18184744 - 18184630
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | |||||||||||||  ||||||| |   ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  280 atatcttctttcaat 294  Q
    || ||||| ||||||    
T  18184644 atctcttcattcaat 18184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 10203858 - 10203738
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||| |  | ||||| |||||| |||||||||||||||| ||||||||| ||||| ||    
T  10203858 atggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttt 10203759  T
Q  277 ttcatatcttctttcaatatt 297  Q
    ||||| |||||||||||||||    
T  10203758 ttcatctcttctttcaatatt 10203738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 12665537 - 12665421
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcaccc-cttt 277  Q
    ||||||||||||||||||| | |||||| |||||| ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  12665437 ttatctcttctttcaat 12665421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 42162790 - 42162675
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtata-ttccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||  ||||||||||||   ||||||| |   |||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  42162690 catctcttctttcaat 42162675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 33726205 - 33726088
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatca-cccctt 276  Q
    ||||||||||||||||||||||| ||||| ||||||| |  ||||| | | ||||||||||||||||||||||||||| |||||| ||| ||| || |||    
T  33726205 atggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactt 33726106  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  33726105 ttcatctcttctttcaat 33726088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 31318997 - 31318882
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtata-ttccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | ||||||||||||  ||||| || |   |||||| ||||| |||||| |||||||||||||||||||||||||| ||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  31318897 catctcttctttcaat 31318882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 44081964 - 44081857
Alignment:
Q  188 ataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatctt 286  Q
    ||||||||||||| ||||||||||||  |||||||| |  || |||| |||||||||||| ||||||||||||| |||||||||||| ||||||| ||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  287 ctttcaat 294  Q
    ||||||||    
T  44081864 ctttcaat 44081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 43186218 - 43186104
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | ||||||||||||  |||||||| |  | |||| ||||||| |||| |||||||||| ||||||||||||||  |||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  280 atatcttctttcaat 294  Q
    || | ||||||||||    
T  43186118 atcttttctttcaat 43186104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 3690600 - 3690719
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||| |||||| | ||||| |||||||  | || ||||||| |||||| || |||||||| |||||||  || || ||||||||| | |     
T  3690600 atggaaaaagatagatagacatccttttttatacacctttcatatatattctatgtgtcagaggtatttttgtaatttcgcaacacatcatcacctcatc 3690699  T
Q  278 tcatatcttctttcaatatt 297  Q
    |||| |||||||| ||||||    
T  3690700 tcatctcttcttttaatatt 3690719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 38845073 - 38845139
Alignment:
Q  230 atgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaatatt 297  Q
    ||||||||||| ||||||||||||||  ||||| |||||||||||| || || | |||||||||||||    
T  38845073 atgtgttagggttattttagtaatttctcatcacatcatcacccctctt-atcttttctttcaatatt 38845139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 34307137 - 34307252
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  279 catatcttctttcaat 294  Q
    ||||||||||||||||    
T  34307237 catatcttctttcaat 34307252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 2509216 - 2509101
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    |||||||||||||||||||| |||||||||||||| |||||||| |  | ||||| |||||| |||||||||||||||||||||||||| ||||| ||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  2509116 catctcttctttcaat 2509101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 39249864 - 39249977
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcaccccttttca 280  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  || |||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  281 tatcttctttcaat 294  Q
    | ||||||||||||    
T  39249964 tctcttctttcaat 39249977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 28647544 - 28647430
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| ||||| ||||| | || ||||| || ||||||||||||  ||||||| |||||| |||||| |||| |||||||||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  280 atatcttctttcaat 294  Q
    || | ||||||||||    
T  28647444 atctattctttcaat 28647430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 19258674 - 19258786
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcat 281  Q
    ||||||||||||||||||| ||||| ||||| | || ||||| |  ||||||||||||  ||||||| |||||| |||||| |||| |||||||||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  282 atcttctttcaat 294  Q
     |||| |||||||    
T  19258774 ctcttttttcaat 19258786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 46901734 - 46901845
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatatt-ccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | |||||||||||   |||||||| |   |||||| | ||| |||||| |||||||||||||||||||||||||| ||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  279 catatcttcttt 290  Q
    ||| ||||||||    
T  46901834 catctcttcttt 46901845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 9642864 - 9642978
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatca-cccctt 276  Q
    |||||||||||||||||||||  |||||| ||||| |  ||||| | | | ||||||| |||| | |||||||||||| |||||||||||||| ||||||    
T  9642864 atggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtgt-agggatgttttagtaatttcacatcatatcatcaccccctt 9642962  T
Q  277 ttcatatcttctttca 292  Q
     |||| ||||||||||    
T  9642963 ctcatctcttctttca 9642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 35545102 - 35544989
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggta-ttttagtaattttacatcatatcatcaccccttttca 280  Q
    ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  281 tatcttctttcaat 294  Q
    ||||||||||||||    
T  35545002 tatcttctttcaat 35544989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 44275897 - 44275780
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    |||||||||||| |||||||| ||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  280 atatcttctttcaatatt 297  Q
    || |||||||||||||||    
T  44275797 atctcttctttcaatatt 44275780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 21390953 - 21391072
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||| |   |||||||||||||||||||||||||||||||||||||  |||| | |||    
T  21390953 atggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattt 21391052  T
Q  278 tcatatcttctttcaatatt 297  Q
    |||| |||||||||||||||    
T  21391053 tcatctcttctttcaatatt 21391072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 6112821 - 6112707
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||  ||||||||||||  |||||||| | ||||||| |||||||||||| ||||||||||||||||||||||| || |||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  6112721 atctcttctttcaat 6112707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 49244006 - 49243892
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  49243906 atctcttctttcaat 49243892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 3672466 - 3672351
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||| ||| ||||||||||||  |||||||| |  | ||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  3672366 catctcttctttcaat 3672351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 7217957 - 7217858
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||| |  | |||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 28093095 - 28093210
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | ||||||||||||  |||||||| |  || |||| |||||||||||| |||| ||||||||||||||||||||| ||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  279 catatcttctttcaat 294  Q
    ||| ||| ||||||||    
T  28093195 catctctcctttcaat 28093210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 46192551 - 46192436
Alignment:
Q  180 ggaaaaagataggtagacacc-ttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||| |  ||||||   |||||||||||| | |||| |||||| || ||||||||||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  279 catatcttctttcaat 294  Q
     || ||||||||||||    
T  46192451 tatctcttctttcaat 46192436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 45829257 - 45829371
Alignment:
Q  180 ggaaaaagataggtagacacc-ttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| |||||| |||||||  ||||||| |  |||| ||  |||||||||||| | |||| |||||| || ||||||||||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  279 catatcttctttcaat 294  Q
     || ||||||||||||    
T  45829356 tatctcttctttcaat 45829371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 51038958 - 51038840
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatca-cccct 275  Q
    ||||||||||||||| ||||||||||||||||  ||  || ||||| |  || |||||  || | |||||||||||||| |||||| | ||||| |||||    
T  51038958 atggaaaaagataggcagacaccttttttcatgtacatctcatgtacacccctatgtggcagagatattttagtaatttcacatcacaccatcaccccct 51038859  T
Q  276 tttcatatcttctttcaat 294  Q
    |||||| ||||||||||||    
T  51038858 tttcatctcttctttcaat 51038840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 52191198 - 52191290
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatca 270  Q
    |||||||||||| |  ||||||| ||||| ||||||| ||  |||| |  |||| ||||||| |||||||||||||||  ||||| |||||||    
T  52191198 atggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatca 52191290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 42220963 - 42221077
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtatttt-agtaattttacatcatatcatcacccctttt 278  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  42220963 ggaaaaagataggtagacaccttttt-catacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  279 catatcttctttcaat 294  Q
     |||||||||||||||    
T  42221062 tatatcttctttcaat 42221077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 34828256 - 34828142
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | |||||||||||||||||||| | |  |||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  34828156 atctcttctttcaat 34828142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 36346561 - 36346678
Alignment:
Q  177 gatggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccct 275  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| |  | |||||||||||||||||||||||||||||||||||||||||| || |    
T  36346561 gatggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-cctt 36346659  T
Q  276 tttcatatcttctttcaat 294  Q
    |||||| ||||||||||||    
T  36346660 tttcatctcttctttcaat 36346678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 28307494 - 28307609
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| |  || || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  28307594 catctcttctttcaat 28307609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 45782659 - 45782774
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| ||||| ||||||   ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  45782759 catctcttctttcaat 45782774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 26972202 - 26972317
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |  || |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  279 catatcttctttcaat 294  Q
    ||| ||| ||||||||    
T  26972302 catctctcctttcaat 26972317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 34108618 - 34108503
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||| | ||| |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||| ||||||    
T  34108518 catctcttcattcaat 34108503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 46475216 - 46475101
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgtta-ggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| ||  ||||||||| |||||||||||||||||| |||||| ||| |||||||||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  46475116 catctcttctttcaat 46475101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 5811163 - 5811277
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| ||||| ||||||| |  ||||| |   ||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  5811263 atctcttctttcaat 5811277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 31148481 - 31148367
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||  ||||||||||||| |||||  | |  |||| |||||||  |||||||||||||||||||||||||||||||| |||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  31148381 atctcttctttcaat 31148367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 29953571 - 29953665
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtata-ttccatgtgttaggggtattttagtaattttacatcatatcatcaccc 273  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| | |||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 7699881 - 7699997
Alignment:
Q  179 tggaaaaagataggtagacaccttttttcatacaccacttatgtatat-tccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| || |  | ||||||||| ||||||||||||||||||| |||||||||||| || |||    
T  7699881 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7699980  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  7699981 ttatctcttctttcaat 7699997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 7700079 - 7700195
Alignment:
Q  179 tggaaaaagataggtagacaccttttttcatacaccacttatgtatat-tccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| || |  | ||||||||| ||||||||||||||||||| |||||||||||| || |||    
T  7700079 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700178  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  7700179 ttatctcttctttcaat 7700195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 7700277 - 7700393
Alignment:
Q  179 tggaaaaagataggtagacaccttttttcatacaccacttatgtatat-tccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| || |  | ||||||||| ||||||||||||||||||| |||||||||||| || |||    
T  7700277 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700376  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  7700377 ttatctcttctttcaat 7700393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 7700475 - 7700591
Alignment:
Q  179 tggaaaaagataggtagacaccttttttcatacaccacttatgtatat-tccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| || |  | ||||||||| ||||||||||||||||||| |||||||||||| || |||    
T  7700475 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700574  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  7700575 ttatctcttctttcaat 7700591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 13108338 - 13108226
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| ||||| |||||||  | ||||| |   ||||||||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccc-tttc 13108240  T
Q  280 atatcttctttcaa 293  Q
    || |||||||||||    
T  13108239 atctcttctttcaa 13108226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 30887890 - 30887777
Alignment:
Q  182 aaaaagataggta-gacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttca 280  Q
    ||||||||| ||| |||||| ||||||||||||  ||||| || |  |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  281 tatcttctttcaat 294  Q
    | ||||| ||||||    
T  30887790 tctcttcattcaat 30887777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 21807324 - 21807439
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcat 281  Q
    |||||||||||| |||| | ||||| ||||||  || || || |  ||| |||||||||||||||||||||||| |||| | ||||||| || |||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  282 atcttctttcaatatt 297  Q
     |||||||||||||||    
T  21807424 ctcttctttcaatatt 21807439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 23980322 - 23980208
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | ||||| |||||      ||||| ||  ||| |||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  23980322 ggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttc 23980223  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  23980222 atctcttctttcaat 23980208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 36957619 - 36957503
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||  ||||| |||||||  | || || |  ||||||||| ||||||||||||||||||||||| | || |||| || |||||    
T  36957619 ggaaaaagataggtagacacaattttttatacacctttcatatacac-ccatgtgttgggggtattttagtaattttacattacattatcatccattttc 36957521  T
Q  280 atatcttctttcaatatt 297  Q
    || ||||||| |||||||    
T  36957520 atctcttcttacaatatt 36957503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 15020421 - 15020357
Alignment:
Q  229 catgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaat 294  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||| |||| | ||||||||||||    
T  15020421 catgtgttagggatattttagtaatttcacatcatatcttcacccc-tttcgtctcttctttcaat 15020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 20086690 - 20086738
Alignment:
Q  242 tattttagtaattttacatcatatcatcaccccttttcatatcttcttt 290  Q
    |||||||||||||| |||||| ||||||||||||||| || ||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttt 20086738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 42950036 - 42950111
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattt 255  Q
    ||||||||||||||||||||| ||||| |||||||    ||||| |  |||||| | |||||||||||||||||||    
T  42950036 ggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 30735495 - 30735609
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggta-ttttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca-ccctttt 30735593  T
Q  279 catatcttctttcaat 294  Q
     |||||||||||||||    
T  30735594 tatatcttctttcaat 30735609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 51339783 - 51339897
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |   |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  51339883 atctcttctttcaat 51339897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 21559753 - 21559635
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    |||||||||||| |||||||| ||||||||||||| |||||||| |  || ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  279 catatcttctttcaatatt 297  Q
    ||| |||||||||||||||    
T  21559653 catctcttctttcaatatt 21559635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 46111941 - 46112058
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||||||| |||||||||||||  |||| || || || |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  46111941 atggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttt 46112040  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  46112041 ttcatctcttctttcaat 46112058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | |||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 34749897 - 34750012
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||  ||||| | ||||||||||||  |||||||| |  || |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  34749997 catctcttctttcaat 34750012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 48200877 - 48200759
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtata-ttccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | ||||||||||||   ||||||| |   |||||| ||| |||||||| ||||||||||||||||||||||| || ||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  279 catatcttctttcaatatt 297  Q
    ||| |||||||||||||||    
T  48200777 catctcttctttcaatatt 48200759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 36749596 - 36749483
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcaccccttttca 280  Q
    ||||||||||||||||||  ||||||||||||   ||||||| |  | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  281 tatcttctttcaat 294  Q
    | ||||||||||||    
T  36749496 tctcttctttcaat 36749483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 36370337 - 36370452
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||| ||  ||||||||||||   |||| || |  | ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  36370437 catctcttctttcaat 36370452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 44000181 - 44000066
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||  ||||||||||||   |||||||    | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  44000081 catctcttctttcaat 44000066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 39467101 - 39467218
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||| ||||| ||||| ||||||| |  ||||| |   ||||||||| || |||||||||||||| | |||| ||| ||||||||||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  280 atatcttctttcaatatt 297  Q
    || |||||||||||||||    
T  39467201 atctcttctttcaatatt 39467218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 22894870 - 22894757
Alignment:
Q  181 gaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||| |||||||| |||| |||||||  |||||||| |  | ||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  22894771 atctcttctttcaat 22894757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 38231486 - 38231370
Alignment:
Q  178 atggaaaaagataggtagaca-ccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||| |  |||||||| ||||||| |||||| |||| |||| | || || | || ||    
T  38231486 atggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatta-ccatt 38231388  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||||||||||||||||    
T  38231387 ttcatatcttctttcaat 38231370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 53638278 - 53638215
Alignment:
Q  228 ccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttc 291  Q
    |||| ||| ||||||||||||| |||||||||||| ||||||||||| | |||| |||||||||    
T  53638278 ccatatgtcaggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttc 53638215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 39072276 - 39072383
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    ||||||||||||||||||||||  ||||| ||||| |  | ||||| |  |||||||| | |||||||||||||     |||||| |||||||||| |||    
T  39072276 atggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagta-----acatcacatcatcacccattt 39072370  T
Q  278 tcatatcttcttt 290  Q
    |||| ||||||||    
T  39072371 tcatctcttcttt 39072383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 50966256 - 50966204
Alignment:
Q  242 tattttagtaattttacatcatatcatcaccccttttcatatcttctttcaatatt 297  Q
    ||||||||||||||||||| |||||||   || ||||||| |||||||||||||||    
T  50966256 tattttagtaattttacattatatcat---cctttttcatctcttctttcaatatt 50966204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 51069391 - 51069339
Alignment:
Q  242 tattttagtaattttacatcatatcatcaccccttttcatatcttctttcaatatt 297  Q
    ||||||||||||||||||| |||||||   || ||||||| |||||||||||||||    
T  51069391 tattttagtaattttacattatatcat---cctttttcatctcttctttcaatatt 51069339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 31800749 - 31800632
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||| ||||||| ||||||||||||| ||| |||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  280 atatcttctttcaatatt 297  Q
    || | |||||||||||||    
T  31800649 atcttttctttcaatatt 31800632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 1815618 - 1815730
Alignment:
Q  179 tggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    |||||||||||||||||||||||||||||||| |  |   ||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1815618 tggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  1815715 catctcttctttcaat 1815730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 39371121 - 39371004
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| |  || |||| |||||||||||| |||||||||||||||||||||||||| ||    
T  39371121 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttt 39371022  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  39371021 ttcatctcttctttcaat 39371004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 2237470 - 2237353
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| |  || | || |||||||||||| |||||||||||||||||||||||||| ||    
T  2237470 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttt 2237371  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  2237370 ttcatctcttctttcaat 2237353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 40887941 - 40888056
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |  || || | |||| |||||||||||||||||||||||||||| ||||| ||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  40888041 catctcttctttcaat 40888056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 13347320 - 13347205
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |  | ||||| |||||||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  279 catatcttctttcaat 294  Q
    ||| | ||||||||||    
T  13347220 catctattctttcaat 13347205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 14831736 - 14831621
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||| |  || | || |||||||||||| | |||||||||||||||||||||||| ||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  14831636 catctcttctttcaat 14831621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 42683791 - 42683676
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    |||||||||||| |||||| | ||||||||||||| |||||||| |  || || | ||||||||||||||||||||||||||||||||| || || ||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  279 catatcttctttcaat 294  Q
    ||| ||||||||||||    
T  42683691 catctcttctttcaat 42683676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 27553376 - 27553487
Alignment:
Q  183 aaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcata 282  Q
    |||| |||| |||||||| ||||||||||||| |||||||| |  | |||||||||| |||||||||||||||||||||| || ||||||  ||||| |     
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  283 tcttctttcaat 294  Q
    ||||||||||||    
T  27553476 tcttctttcaat 27553487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 9408094 - 9408153
Alignment:
Q  235 ttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaat 294  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaat 9408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 17225460 - 17225394
Alignment:
Q  228 ccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaat 294  Q
    |||||| | ||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  17225460 ccatgtatcaggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaat 17225394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 19124474 - 19124563
Alignment:
Q  182 aaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcac 271  Q
    |||||||||||||||||||  |||| ||||||| || || || | | || |||| |  ||||||||||||||||||||||||||||||||    
T  19124474 aaaaagataggtagacaccaatttttatacacctctcatatacagttcacgtgtcaaaggtattttagtaattttacatcatatcatcac 19124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 41003849 - 41003966
Alignment:
Q  179 tggaaaaagataggtagacaccttttt-tcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||  ||| |||||||| | ||||||| || ||||| |  |||| ||| |||| ||||| ||||||||||||||| ||||||| ||||||    
T  41003849 tggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggatattt-agtaattttacatcacatcatcatcccttt 41003947  T
Q  278 tcatatcttctttcaatatt 297  Q
    | ||||||| ||||||||||    
T  41003948 ttatatctt-tttcaatatt 41003966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 19596067 - 19596148
Alignment:
Q  180 ggaaaaagataggtagaca-ccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacat 260  Q
    ||||||||||||||||||| |||||||| | | ||| |||||||| |  |||||||| ||||||| |||||| |||| ||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacat 19596148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 44958305 - 44958190
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  279 catatcttctttcaat 294  Q
     || ||||||||||||    
T  44958205 tatctcttctttcaat 44958190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 16090012 - 16089899
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||||| || || ||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcacca-cctttttt 16089914  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  16089913 atctcttctttcaat 16089899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 33732760 - 33732646
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |  |||| | ||||||||||||||||||||||||||||||||| ||||| |||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  33732660 atctcttctttcaat 33732646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 3830900 - 3831011
Alignment:
Q  183 aaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcata 282  Q
    |||||||||||||||||| ||||||||||||| |||||||| |  ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||     
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  283 tcttctttcaat 294  Q
    ||||||||||||    
T  3831000 tcttctttcaat 3831011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 37498862 - 37498979
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacc--cctt 276  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||  | ||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  37498962 ttcatctcttctttcaat 37498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 6376238 - 6376352
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | ||||| ||||||| |  ||||| ||  |||||||||| |||||||||||||||| |||||| ||| |||||| |||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  6376338 atctcttctttcaat 6376352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 14573138 - 14573072
Alignment:
Q  228 ccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  14573138 ccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaat 14573072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 41188963 - 41188846
Alignment:
Q  178 atggaaaaagataggtagacaccttttt-tcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||| ||||||| |||| | ||||||| || ||||| ||  ||||||| || | ||||||||||||||||||||| ||||||| |||||    
T  41188963 atggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctt 41188864  T
Q  277 ttcatatcttctttcaat 294  Q
    |||||||| | |||||||    
T  41188863 ttcatatcatttttcaat 41188846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 36315753 - 36315638
Alignment:
Q  180 ggaaaaagataggtagaca-ccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||| |   ||||||| |||||||||||| | |||| |||||| || |||||| |||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  279 catatcttctttcaat 294  Q
     || ||||||||||||    
T  36315653 tatctcttctttcaat 36315638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 37914235 - 37914350
Alignment:
Q  179 tggaaaaagataggtagaca-ccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttt 277  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||| |  ||||||   | |||||||||| | |||| |||||| || |||||||||||    
T  37914235 tggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  278 tcatatcttctttcaat 294  Q
    | || ||||||||||||    
T  37914334 ttatctcttctttcaat 37914350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 24137149 - 24137206
Alignment:
Q  237 aggggtattttagtaattttacatcatatcatcaccccttttcatatcttctttcaat 294  Q
    ||||||||||||||||||| |||||| ||| ||| |||||||||| ||||||||||||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaat 24137206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 6912 - 6795
Alignment:
Q  178 atggaaaaagataggtagacaccttttttcatacaccacttatgtatattc-catgtgttaggggtattttagtaattttacatcatatcatcacccctt 276  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||| |  | ||||| |||||| ||||| |||||||||||||||||||||||||| ||    
T  6912 atggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttt 6813  T
Q  277 ttcatatcttctttcaat 294  Q
    ||||| ||||||||||||    
T  6812 ttcatctcttctttcaat 6795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 13697759 - 13697645
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||| | | |||||||||||  ||||||||| |  ||||||||||| | |||||||||||||||| ||||||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  13697659 atctcttctttcaat 13697645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 3986905 - 3987019
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | |||||||||||    |||||||||  |||||| ||| |||||||| |||||||||||||||||| |||| ||||||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  3987005 atctcttctttcaat 3987019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 14023124 - 14023011
Alignment:
Q  181 gaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttca 280  Q
    |||||||||||||||||||| ||||| ||||||| |  ||||| |   ||||||||||||||||||||||||||| |||||| ||| ||||||||| |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  281 tatcttctttcaat 294  Q
    | ||||||||||||    
T  14023024 tctcttctttcaat 14023011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 3118046 - 3118161
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattcc-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 278  Q
    ||||||||||||||||||| | ||||||||||| | |||||||| | ||| |||| ||||||||||||||||||||||||||||| ||| ||||| ||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  279 catatcttctttcaat 294  Q
     || | ||||||||||    
T  3118146 tatctattctttcaat 3118161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 294
Target Start/End: Complemental strand, 24208635 - 24208521
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||||||||||||||| | ||||| ||||||| || || || |   ||||||||||||||||||||||||||| |||||| ||| |||||| |||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  280 atatcttctttcaat 294  Q
    || ||||||||||||    
T  24208535 atctcttctttcaat 24208521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 15345659 - 15345773
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 279  Q
    ||||||| ||||||||||| ||||||||||||||  |||||||| |  | |||| ||||||| |||| |||||||| | ||||||||||||||  |||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  280 atatcttctttcaat 294  Q
    || | ||||||||||    
T  15345759 atcttttctttcaat 15345773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 87162 - 87278
Alignment:
Q  180 ggaaaaagataggtagacaccttttttcatacaccacttatgtatattccatgtgttaggggtattttagtaattttacat--catatcatcaccccttt 277  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |  |||||||||||||||||||||||||||||| ||   ||||||||||   |||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  278 tcatatcttctttcaat 294  Q
    |||| ||||||||||||    
T  87262 tcatctcttctttcaat 87278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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