View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3694_low_6 (Length: 276)

Name: NF3694_low_6
Description: NF3694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3694_low_6
NF3694_low_6
[»] chr5 (9 HSPs)
chr5 (7-43)||(34154873-34154909)
chr5 (7-42)||(8170043-8170078)
chr5 (7-42)||(32703463-32703498)
chr5 (7-37)||(2838824-2838854)
chr5 (7-37)||(16880706-16880736)
chr5 (7-37)||(41014364-41014394)
chr5 (7-36)||(24448937-24448966)
chr5 (10-42)||(7368437-7368469)
chr5 (9-37)||(43334249-43334277)
[»] chr2 (12 HSPs)
chr2 (1-41)||(17623606-17623646)
chr2 (1-41)||(17668044-17668084)
chr2 (7-42)||(9671220-9671255)
chr2 (7-37)||(8455375-8455405)
chr2 (7-37)||(10546209-10546239)
chr2 (7-37)||(12023978-12024008)
chr2 (7-37)||(22371100-22371130)
chr2 (7-37)||(25249797-25249827)
chr2 (7-37)||(36871538-36871568)
chr2 (1-34)||(27573669-27573702)
chr2 (9-37)||(10543744-10543772)
chr2 (9-37)||(24200686-24200714)
[»] chr3 (17 HSPs)
chr3 (3-37)||(6411877-6411911)
chr3 (7-42)||(1217151-1217186)
chr3 (7-42)||(7696946-7696981)
chr3 (2-37)||(9276332-9276367)
chr3 (7-42)||(15797283-15797318)
chr3 (7-42)||(22122976-22123011)
chr3 (7-42)||(31592910-31592945)
chr3 (7-42)||(34771423-34771458)
chr3 (7-37)||(4495723-4495753)
chr3 (7-37)||(16735508-16735538)
chr3 (7-37)||(22609833-22609863)
chr3 (7-37)||(26869774-26869804)
chr3 (7-37)||(40272871-40272901)
chr3 (7-37)||(47624109-47624139)
chr3 (8-37)||(52428537-52428566)
chr3 (9-37)||(10795486-10795514)
chr3 (9-37)||(45786277-45786305)
[»] chr1 (14 HSPs)
chr1 (3-37)||(41319861-41319895)
chr1 (1-42)||(38478335-38478376)
chr1 (7-42)||(35253246-35253281)
chr1 (7-37)||(4349707-4349737)
chr1 (7-37)||(10378794-10378824)
chr1 (8-42)||(12126897-12126931)
chr1 (7-37)||(23768379-23768409)
chr1 (7-41)||(25468322-25468356)
chr1 (7-37)||(32632616-32632646)
chr1 (9-37)||(17470407-17470435)
chr1 (9-37)||(18742020-18742048)
chr1 (9-37)||(19932816-19932844)
chr1 (3-31)||(20999905-20999933)
chr1 (9-37)||(27201716-27201744)
[»] chr6 (5 HSPs)
chr6 (1-42)||(25557764-25557805)
chr6 (6-42)||(26097199-26097235)
chr6 (7-42)||(1347003-1347038)
chr6 (7-42)||(1354816-1354851)
chr6 (9-37)||(7947433-7947461)
[»] chr8 (14 HSPs)
chr8 (1-37)||(5689677-5689713)
chr8 (7-42)||(12670309-12670344)
chr8 (1-36)||(28873245-28873280)
chr8 (3-37)||(389691-389725)
chr8 (3-37)||(2626568-2626602)
chr8 (7-37)||(13160747-13160777)
chr8 (7-41)||(24365118-24365152)
chr8 (7-37)||(29521744-29521774)
chr8 (7-37)||(29877140-29877170)
chr8 (7-37)||(36720842-36720872)
chr8 (7-37)||(44530195-44530225)
chr8 (7-37)||(45071310-45071340)
chr8 (9-37)||(43942370-43942398)
chr8 (9-37)||(44742580-44742608)
[»] scaffold0015 (1 HSPs)
scaffold0015 (7-42)||(48693-48728)
[»] chr7 (8 HSPs)
chr7 (7-42)||(21172068-21172103)
chr7 (7-42)||(42391159-42391194)
chr7 (7-37)||(38604572-38604602)
chr7 (7-36)||(2662994-2663023)
chr7 (7-36)||(10693132-10693161)
chr7 (7-36)||(11741840-11741869)
chr7 (7-36)||(19265861-19265890)
chr7 (8-37)||(19266496-19266525)
[»] chr4 (16 HSPs)
chr4 (7-42)||(9832372-9832407)
chr4 (10-41)||(16911604-16911635)
chr4 (7-42)||(20225023-20225058)
chr4 (7-42)||(29207957-29207992)
chr4 (7-42)||(47528589-47528624)
chr4 (7-42)||(48598884-48598919)
chr4 (7-41)||(5306723-5306757)
chr4 (7-37)||(5648304-5648334)
chr4 (7-37)||(6430685-6430715)
chr4 (7-37)||(17043453-17043483)
chr4 (7-37)||(30639425-30639455)
chr4 (7-41)||(47441589-47441623)
chr4 (7-37)||(47444003-47444033)
chr4 (9-37)||(20639720-20639748)
chr4 (9-37)||(25343233-25343261)
chr4 (9-37)||(54175109-54175137)
[»] scaffold0036 (1 HSPs)
scaffold0036 (7-37)||(35076-35106)
[»] scaffold0180 (1 HSPs)
scaffold0180 (7-35)||(24192-24220)


Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34154873 - 34154909
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgatttat 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  34154873 catttggtgtattgtacgcagccttaccctgatttat 34154909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 8170043 - 8170078
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8170043 catttggtgtattgtacgcagccttaccctgtttta 8170078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 32703498 - 32703463
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32703498 catttggtgtattgtacgcagccttaccctgtttta 32703463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 2838854 - 2838824
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  2838854 catttggtgtattgtacgcagccttaccctg 2838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 16880706 - 16880736
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  16880706 catttggtgtattgtacgcagccttaccctg 16880736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 41014394 - 41014364
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  41014394 catttggtgtattgtacgcagccttaccctg 41014364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 24448966 - 24448937
Alignment:
Q  7 catttggtgtattgtacgcagccttaccct 36  Q
    ||||||||||||||||||||||||||||||    
T  24448966 catttggtgtattgtacgcagccttaccct 24448937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 7368469 - 7368437
Alignment:
Q  10 ttggtgtattgtacgcagccttaccctgattta 42  Q
    |||||||||||||||||||||||||||| ||||    
T  7368469 ttggtgtattgtacgcagccttaccctgtttta 7368437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 43334277 - 43334249
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  43334277 tttggtgtattgtacgcagccttaccctg 43334249  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17623646 - 17623606
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccctgattt 41  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  17623646 ttccaccatttggtgtattgtacgcagccttaccctgattt 17623606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17668084 - 17668044
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccctgattt 41  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  17668084 ttccaccatttggtgtattgtacgcagccttaccctgattt 17668044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 9671255 - 9671220
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9671255 catttggtgtattgtacgcagccttaccctgtttta 9671220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 8455375 - 8455405
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  8455375 catttggtgtattgtacgcagccttaccctg 8455405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 10546239 - 10546209
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  10546239 catttggtgtattgtacgcagccttaccctg 10546209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 12023978 - 12024008
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  12023978 catttggtgtattgtacgcagccttaccctg 12024008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 22371130 - 22371100
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  22371130 catttggtgtattgtacgcagccttaccctg 22371100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 25249797 - 25249827
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  25249797 catttggtgtattgtacgcagccttaccctg 25249827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 36871568 - 36871538
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  36871568 catttggtgtattgtacgcagccttaccctg 36871538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27573702 - 27573669
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttacc 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  27573702 ttccaccatttggtgtattgtacgcagccttacc 27573669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 10543772 - 10543744
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  10543772 tttggtgtattgtacgcagccttaccctg 10543744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 24200686 - 24200714
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  24200686 tttggtgtattgtacgcagccttaccctg 24200714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 6411877 - 6411911
Alignment:
Q  3 ccatcatttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||||||    
T  6411877 ccatcatttggtgtattgtacgcagccttaccctg 6411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1217186 - 1217151
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1217186 catttggtgtattgtacgcagccttaccctgtttta 1217151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 7696946 - 7696981
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7696946 catttggtgtattgtacgcagccttaccctgtttta 7696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 9276367 - 9276332
Alignment:
Q  2 tccatcatttggtgtattgtacgcagccttaccctg 37  Q
    |||| |||||||||||||||||||||||||||||||    
T  9276367 tccaccatttggtgtattgtacgcagccttaccctg 9276332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 15797318 - 15797283
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15797318 catttggtgtattgtacgcagccttaccctgtttta 15797283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 22122976 - 22123011
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22122976 catttggtgtattgtacgcagccttaccctgtttta 22123011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 31592945 - 31592910
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31592945 catttggtgtattgtacgcagccttaccctgtttta 31592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 34771423 - 34771458
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34771423 catttggtgtattgtacgcagccttaccctgtttta 34771458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 4495723 - 4495753
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  4495723 catttggtgtattgtacgcagccttaccctg 4495753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 16735538 - 16735508
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  16735538 catttggtgtattgtacgcagccttaccctg 16735508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 22609863 - 22609833
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  22609863 catttggtgtattgtacgcagccttaccctg 22609833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 26869804 - 26869774
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  26869804 catttggtgtattgtacgcagccttaccctg 26869774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 40272871 - 40272901
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  40272871 catttggtgtattgtacgcagccttaccctg 40272901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 47624139 - 47624109
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  47624139 catttggtgtattgtacgcagccttaccctg 47624109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 52428537 - 52428566
Alignment:
Q  8 atttggtgtattgtacgcagccttaccctg 37  Q
    ||||||||||||||||||||||||||||||    
T  52428537 atttggtgtattgtacgcagccttaccctg 52428566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 10795486 - 10795514
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  10795486 tttggtgtattgtacgcagccttaccctg 10795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 45786277 - 45786305
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  45786277 tttggtgtattgtacgcagccttaccctg 45786305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 41319861 - 41319895
Alignment:
Q  3 ccatcatttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||||||    
T  41319861 ccatcatttggtgtattgtacgcagccttaccctg 41319895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38478335 - 38478376
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  38478335 ttccaccatttggtgtattgtacgcagccttaccctgtttta 38478376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 35253246 - 35253281
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35253246 catttggtgtattgtacgcagccttaccctgtttta 35253281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 4349737 - 4349707
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  4349737 catttggtgtattgtacgcagccttaccctg 4349707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 10378794 - 10378824
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  10378794 catttggtgtattgtacgcagccttaccctg 10378824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 12126897 - 12126931
Alignment:
Q  8 atttggtgtattgtacgcagccttaccctgattta 42  Q
    |||||||||||||||||||||||||||||| ||||    
T  12126897 atttggtgtattgtacgcagccttaccctgtttta 12126931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 23768379 - 23768409
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  23768379 catttggtgtattgtacgcagccttaccctg 23768409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 25468322 - 25468356
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattt 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  25468322 catttggtgtattgtacgcaaccttaccctgattt 25468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 32632616 - 32632646
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  32632616 catttggtgtattgtacgcagccttaccctg 32632646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 17470407 - 17470435
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  17470407 tttggtgtattgtacgcagccttaccctg 17470435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 18742020 - 18742048
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  18742020 tttggtgtattgtacgcagccttaccctg 18742048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 19932816 - 19932844
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  19932816 tttggtgtattgtacgcagccttaccctg 19932844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 20999905 - 20999933
Alignment:
Q  3 ccatcatttggtgtattgtacgcagcctt 31  Q
    |||||||||||||||||||||||||||||    
T  20999905 ccatcatttggtgtattgtacgcagcctt 20999933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 27201744 - 27201716
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  27201744 tttggtgtattgtacgcagccttaccctg 27201716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25557805 - 25557764
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccctgattta 42  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  25557805 ttccttcatttggtgtattgtacgcagccttaccctgtttta 25557764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26097235 - 26097199
Alignment:
Q  6 tcatttggtgtattgtacgcagccttaccctgattta 42  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26097235 tcatttggtgtattgtacgcagccttaccctgtttta 26097199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1347038 - 1347003
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1347038 catttggtgtattgtacgcagccttaccctgtttta 1347003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 1354816 - 1354851
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1354816 catttggtgtattgtacgcagccttaccctgtttta 1354851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 7947433 - 7947461
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  7947433 tttggtgtattgtacgcagccttaccctg 7947461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5689713 - 5689677
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccctg 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5689713 ttccaccatttggtgtattgtacgcagccttaccctg 5689677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 12670309 - 12670344
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12670309 catttggtgtattgtacgcagccttaccctgtttta 12670344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28873280 - 28873245
Alignment:
Q  1 ttccatcatttggtgtattgtacgcagccttaccct 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  28873280 ttccatcatttggtgtattgtacgcaaccttaccct 28873245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 389725 - 389691
Alignment:
Q  3 ccatcatttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  389725 ccatcatttggtgtattgtacgcaaccttaccctg 389691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2626602 - 2626568
Alignment:
Q  3 ccatcatttggtgtattgtacgcagccttaccctg 37  Q
    ||||||||||||||||||||||||| |||||||||    
T  2626602 ccatcatttggtgtattgtacgcagtcttaccctg 2626568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 13160777 - 13160747
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  13160777 catttggtgtattgtacgcagccttaccctg 13160747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 24365118 - 24365152
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattt 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  24365118 catttggtgtattgttcgcagccttaccctgattt 24365152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 29521744 - 29521774
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  29521744 catttggtgtattgtacgcagccttaccctg 29521774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 29877170 - 29877140
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  29877170 catttggtgtattgtacgcagccttaccctg 29877140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 36720872 - 36720842
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  36720872 catttggtgtattgtacgcagccttaccctg 36720842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 44530225 - 44530195
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  44530225 catttggtgtattgtacgcagccttaccctg 44530195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 45071340 - 45071310
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  45071340 catttggtgtattgtacgcagccttaccctg 45071310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 43942398 - 43942370
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  43942398 tttggtgtattgtacgcagccttaccctg 43942370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 44742580 - 44742608
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  44742580 tttggtgtattgtacgcagccttaccctg 44742608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 48693 - 48728
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48693 catttggtgtattgtacgcagccttaccctgtttta 48728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 21172068 - 21172103
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21172068 catttggtgtattgtacgcagccttaccctgtttta 21172103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 42391159 - 42391194
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42391159 catttggtgtattgtacgcagccttaccctgtttta 42391194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 38604602 - 38604572
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  38604602 catttggtgtattgtacgcagccttaccctg 38604572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 2662994 - 2663023
Alignment:
Q  7 catttggtgtattgtacgcagccttaccct 36  Q
    ||||||||||||||||||||||||||||||    
T  2662994 catttggtgtattgtacgcagccttaccct 2663023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 10693132 - 10693161
Alignment:
Q  7 catttggtgtattgtacgcagccttaccct 36  Q
    ||||||||||||||||||||||||||||||    
T  10693132 catttggtgtattgtacgcagccttaccct 10693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 11741869 - 11741840
Alignment:
Q  7 catttggtgtattgtacgcagccttaccct 36  Q
    ||||||||||||||||||||||||||||||    
T  11741869 catttggtgtattgtacgcagccttaccct 11741840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 19265890 - 19265861
Alignment:
Q  7 catttggtgtattgtacgcagccttaccct 36  Q
    ||||||||||||||||||||||||||||||    
T  19265890 catttggtgtattgtacgcagccttaccct 19265861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 19266525 - 19266496
Alignment:
Q  8 atttggtgtattgtacgcagccttaccctg 37  Q
    ||||||||||||||||||||||||||||||    
T  19266525 atttggtgtattgtacgcagccttaccctg 19266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 9832372 - 9832407
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9832372 catttggtgtattgtacgcagccttaccctgtttta 9832407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 16911635 - 16911604
Alignment:
Q  10 ttggtgtattgtacgcagccttaccctgattt 41  Q
    ||||||||||||||||||||||||||||||||    
T  16911635 ttggtgtattgtacgcagccttaccctgattt 16911604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 20225058 - 20225023
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20225058 catttggtgtattgtacgcagccttaccctgtttta 20225023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 29207957 - 29207992
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29207957 catttggtgtattgtacgcagccttaccctgtttta 29207992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 47528589 - 47528624
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47528589 catttggtgtattgtacgcagccttaccctgtttta 47528624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 48598884 - 48598919
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattta 42  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48598884 catttggtgtattgtacgcagccttaccctgtttta 48598919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 5306723 - 5306757
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattt 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  5306723 catttggtgtattgtacgcaaccttaccctgattt 5306757  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 5648334 - 5648304
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  5648334 catttggtgtattgtacgcagccttaccctg 5648304  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 6430685 - 6430715
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  6430685 catttggtgtattgtacgcagccttaccctg 6430715  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 17043453 - 17043483
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  17043453 catttggtgtattgtacgcagccttaccctg 17043483  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 30639455 - 30639425
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  30639455 catttggtgtattgtacgcagccttaccctg 30639425  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 47441589 - 47441623
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctgattt 41  Q
    ||||||||||||||||| |||||||||||||||||    
T  47441589 catttggtgtattgtacacagccttaccctgattt 47441623  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 47444033 - 47444003
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  47444033 catttggtgtattgtacgcagccttaccctg 47444003  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 20639720 - 20639748
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  20639720 tttggtgtattgtacgcagccttaccctg 20639748  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 25343261 - 25343233
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  25343261 tttggtgtattgtacgcagccttaccctg 25343233  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 54175137 - 54175109
Alignment:
Q  9 tttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||    
T  54175137 tttggtgtattgtacgcagccttaccctg 54175109  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 35076 - 35106
Alignment:
Q  7 catttggtgtattgtacgcagccttaccctg 37  Q
    |||||||||||||||||||||||||||||||    
T  35076 catttggtgtattgtacgcagccttaccctg 35106  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 24192 - 24220
Alignment:
Q  7 catttggtgtattgtacgcagccttaccc 35  Q
    |||||||||||||||||||||||||||||    
T  24192 catttggtgtattgtacgcagccttaccc 24220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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