View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_high_9 (Length: 338)
Name: NF3695_high_9
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 2559041 - 2558714
Alignment:
| Q |
11 |
cagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctca |
110 |
Q |
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| T |
2559041 |
cagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatattccttctatttcaattattacttcacttatccctca |
2558942 |
T |
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| Q |
111 |
tcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctgagcaaaatagacaattgattcaatgacatataaccga |
210 |
Q |
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| T |
2558941 |
tcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttgagcaaaatagacaattgattcaatgacatataaccga |
2558842 |
T |
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| Q |
211 |
atagttgaatataaatgcaaaccagaccctatgcttatgcattagcatctacacatgctttnnnnnnntcccttaaatgaagttnnnnnnngccctaggt |
310 |
Q |
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| T |
2558841 |
atagttgaatataaatgcaaaccagaccctatgcttatgcattagcatctacacatgctttaaaaaaatcccttaaatgaagttaaaaaaagccctaggt |
2558742 |
T |
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| Q |
311 |
cttgcaagatataggatctgggttaact |
338 |
Q |
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| T |
2558741 |
cttgcaagatataggatctggtttaact |
2558714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
| Q |
23 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata |
115 |
Q |
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| T |
25642353 |
attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata |
25642261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
| Q |
23 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
92 |
Q |
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| T |
18997740 |
attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat |
18997671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
| Q |
30 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct |
128 |
Q |
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| T |
10169270 |
tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct |
10169172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
| Q |
30 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat |
83 |
Q |
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| T |
29277840 |
tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat |
29277893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 5334873 - 5334909
Alignment:
| Q |
102 |
tatccctcatcatatgtttccatgtctagaaaacgac |
138 |
Q |
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| T |
5334873 |
tatccctcattatacgtttccatgtctagaaaacgac |
5334909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
| Q |
26 |
aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
92 |
Q |
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| T |
35246938 |
aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat |
35246872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
| Q |
84 |
ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga |
137 |
Q |
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| T |
34049464 |
ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga |
34049411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 21602398 - 21602479
Alignment:
| Q |
161 |
acttccgttgctgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg |
243 |
Q |
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| T |
21602398 |
acttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt-aatatgattgcaaacctaaccctatg |
21602479 |
T |
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