View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3695_low_1 (Length: 974)

Name: NF3695_low_1
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3695_low_1
NF3695_low_1
[»] chr6 (5 HSPs)
chr6 (17-960)||(19746789-19747732)
chr6 (840-892)||(33568839-33568891)
chr6 (830-892)||(33576015-33576077)
chr6 (112-206)||(5978151-5978245)
chr6 (118-206)||(33568012-33568100)
[»] chr5 (4 HSPs)
chr5 (112-438)||(23085864-23086190)
chr5 (835-960)||(23086632-23086757)
chr5 (635-688)||(23086420-23086473)
chr5 (548-590)||(23086318-23086360)
[»] chr7 (8 HSPs)
chr7 (848-960)||(23999555-23999667)
chr7 (112-259)||(15507858-15508005)
chr7 (843-943)||(24021626-24021726)
chr7 (123-266)||(26235981-26236124)
chr7 (837-879)||(24016641-24016683)
chr7 (829-879)||(26237458-26237508)
chr7 (829-879)||(26256619-26256669)
chr7 (154-207)||(26255963-26256016)
[»] chr8 (9 HSPs)
chr8 (123-244)||(11345954-11346075)
chr8 (637-713)||(11345431-11345507)
chr8 (637-713)||(11359309-11359385)
chr8 (845-960)||(11338671-11338786)
chr8 (638-713)||(11338905-11338980)
chr8 (845-960)||(11345196-11345311)
chr8 (845-960)||(11359074-11359189)
chr8 (849-960)||(11339514-11339625)
chr8 (181-232)||(11359865-11359916)
[»] chr3 (4 HSPs)
chr3 (830-960)||(36339960-36340090)
chr3 (123-271)||(36339250-36339398)
chr3 (830-895)||(25901439-25901504)
chr3 (830-880)||(25915472-25915522)
[»] scaffold0707 (2 HSPs)
scaffold0707 (840-892)||(5233-5285)
scaffold0707 (118-206)||(4406-4494)
[»] chr4 (8 HSPs)
chr4 (147-283)||(23839864-23840000)
chr4 (829-890)||(23847337-23847398)
chr4 (644-704)||(3557376-3557436)
chr4 (649-703)||(3565399-3565453)
chr4 (830-880)||(10571451-10571501)
chr4 (658-703)||(1686646-1686691)
chr4 (842-895)||(10467900-10467953)
chr4 (842-895)||(10482038-10482091)
[»] scaffold0649 (1 HSPs)
scaffold0649 (118-264)||(4592-4738)


Alignment Details
Target: chr6 (Bit Score: 880; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 880; E-Value: 0
Query Start/End: Original strand, 17 - 960
Target Start/End: Complemental strand, 19747732 - 19746789
Alignment:
Q  17 aaatttagggttgagaagcgtcacagctctgatggagatccttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttccc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747732 aaatttagggttgagaagcgtcacagctctgatggagatccttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttccc 19747633  T
Q  117 gacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcga 216  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19747632 gacgaacttatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgattcga 19747533  T
Q  217 ccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccc 316  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19747532 ccttcgtacaaaaacacctcaagaagtcttcacaaaatccacacatcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccc 19747433  T
Q  317 cgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattg 416  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  19747432 cgtgagtcgtttactcgagaatccttcaatcactgtttttggtgacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattg 19747333  T
Q  417 ttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747332 ttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactt 19747233  T
Q  517 tccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcgtatcgggcagaagaaga 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19747232 tccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcatatcgggcagaagaaga 19747133  T
Q  617 tgatgcgaaccacaacggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctatt 716  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747132 tgatgcgaaccacagcggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T
Q  717 ggatgtattcaattcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacg 816  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747032 ggatgtattcaaatcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacg 19746933  T
Q  817 aatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtccc 916  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19746932 aatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtccc 19746833  T
Q  917 acactttcagccaactcttcatgttctgatggactgcctttgct 960  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19746832 acactttcagccaactcttcatgttctgatggactgcctttgct 19746789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 840 - 892
Target Start/End: Original strand, 33568839 - 33568891
Alignment:
Q  840 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 892  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33568839 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 33568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 830 - 892
Target Start/End: Original strand, 33576015 - 33576077
Alignment:
Q  830 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 892  Q
    ||||||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  33576015 tgttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgct 33576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 5978151 - 5978245
Alignment:
Q  112 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 206  Q
    |||| ||||| |||||||  ||||||||||| || |||| |||||||||||||   | ||| || ||||||| ||||||||||||| ||||||||    
T  5978151 ttcctgacgaactcatcgtcgaaatcctatcgttccttagcgtgaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatc 5978245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 33568012 - 33568100
Alignment:
Q  118 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 206  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  33568012 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 33568100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 112 - 438
Target Start/End: Original strand, 23085864 - 23086190
Alignment:
Q  112 ttcccgacgagctcatcgcagaaatcct-atcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatg 210  Q
    |||||||||| ||||| || |||||||| || ||| ||||||  |||||| |||  || ||| |||||||| ||||||||||||||| ||||| ||   |    
T  23085864 ttcccgacgaactcattgccgaaatccttattctt-cttaacccgaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcgtctccg 23085962  T
Q  211 attcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtc 310  Q
    || | | |||| || | || || || |||||||| |||||||||||||   ||||||||||||||| ||||| ||| || |||||||||| ||| || ||    
T  23085963 atccaatcttcataaagaatcatcttaagaagtcatcacaaaacccacgtctcatactcacaccactaacttcgaagtaccctatcagtaatgtcgaatc 23086062  T
Q  311 cttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaat 410  Q
    |||| | ||||||||||||||||||||| |||| |  | |||||  ||||||||||  ||||  ||  | || || ||||| ||||||||||||||||||    
T  23086063 cttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgccatggatcagaggacacatgtcatgttgttggttcctgcaat 23086162  T
Q  411 ggattgttttgcttgattttccattctc 438  Q
    |||||| |||||||| ||||||||||||    
T  23086163 ggattgctttgcttgcttttccattctc 23086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 835 - 960
Target Start/End: Original strand, 23086632 - 23086757
Alignment:
Q  835 agcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactct 934  Q
    |||| ||||| |||||||| |||||||| || || ||||||||||  || || ||||| ||    ||||||||||| || ||| | | ||||||| ||||    
T  23086632 agcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctct 23086731  T
Q  935 tcatgttctgatggactgcctttgct 960  Q
    ||||||||||| ||||||||||||||    
T  23086732 tcatgttctgaaggactgcctttgct 23086757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 23086420 - 23086473
Alignment:
Q  635 ttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaa 688  Q
    |||||||| | || |||||||||||||||||||  |||||||||||||||||||    
T  23086420 ttcatggaaatgtgaggtcagaattttcagttttggtgataattgttggagaaa 23086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 548 - 590
Target Start/End: Original strand, 23086318 - 23086360
Alignment:
Q  548 caagttcggttttggttgtgatatttcaacaggaacttacaag 590  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  23086318 caagttcacttttggttgtgatatttcaaccggaacttacaag 23086360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 848 - 960
Target Start/End: Complemental strand, 23999667 - 23999555
Alignment:
Q  848 tgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatg 947  Q
    |||||||||| |||||| |||  | |||||||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| | |||    
T  23999667 tgtttcccttaatcttttgaccaatacatacatgcaatttttgctacctcctagttttgatgaagtcccacactttcagccaactcttcatgttttcatg 23999568  T
Q  948 gactgcctttgct 960  Q
    |||| ||||||||    
T  23999567 gactacctttgct 23999555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 15507858 - 15508005
Alignment:
Q  112 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatga 211  Q
    |||||||||||||||| || ||| |||||||||| |||||| | ||||||||| ||||| | |||||| ||||||||||||||||  |||||||   |||    
T  15507858 ttcccgacgagctcatagccgaagtcctatccttccttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctga 15507957  T
Q  212 ttcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccaca 259  Q
    | | |||||| |  |||| ||||| |||||||| |||||||| |||||    
T  15507958 tccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagccaca 15508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 843 - 943
Target Start/End: Original strand, 24021626 - 24021726
Alignment:
Q  843 gtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttc 942  Q
    |||||||||||||||||||||||||| ||||||  ||  ||||||||| | || || | ||||||||| || |||   ||||||||||||||||| ||||    
T  24021626 gtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc 24021725  T
Q  943 t 943  Q
    |    
T  24021726 t 24021726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 266
Target Start/End: Original strand, 26235981 - 26236124
Alignment:
Q  123 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 222  Q
    |||||| | |||||||| ||||| |||  ||| |||||| ||| || ||| ||||||||||||||||| |||||| ||||||||  |||| | |||||||    
T  26235981 ctcatcaccgaaatcctgtccttgctttgcgttaaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcg 26236080  T
Q  223 tacaaaaacacctcaagaagtcttcacaaaacccacacatcata 266  Q
    |  | || || || |||||||| |||||||| |  |||||||||    
T  26236081 tcgacaaccatcttaagaagtcatcacaaaaacagcacatcata 26236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 837 - 879
Target Start/End: Original strand, 24016641 - 24016683
Alignment:
Q  837 caatttgtgattgtttcccttgatctttcgactgagacataca 879  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  24016641 caatttgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 829 - 879
Target Start/End: Original strand, 26237458 - 26237508
Alignment:
Q  829 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 879  Q
    |||||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  26237458 atgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 829 - 879
Target Start/End: Original strand, 26256619 - 26256669
Alignment:
Q  829 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 879  Q
    |||||||||||||||||||| |||| ||||||||||| || ||||||||||    
T  26256619 atgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 26255963 - 26256016
Alignment:
Q  154 tgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatca 207  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| |||||||||    
T  26255963 tgaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatca 26256016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 11346075 - 11345954
Alignment:
Q  123 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 222  Q
    ||||| || ||||||||||| || |||||||||||||||||  | ||||| |||||||||||||||||||||||| ||||||||   ||| |  ||||||    
T  11346075 ctcatagccgaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcg 11345976  T
Q  223 tacaaaaacacctcaagaagtc 244  Q
    | ||||||||||| || |||||    
T  11345975 tccaaaaacaccttaaaaagtc 11345954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 637 - 713
Target Start/End: Complemental strand, 11345507 - 11345431
Alignment:
Q  637 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 713  Q
    |||||||||||| ||||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11345507 catggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11345431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 637 - 713
Target Start/End: Complemental strand, 11359385 - 11359309
Alignment:
Q  637 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 713  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| ||| ||||||||    
T  11359385 catggagaagtcaggtcagaattctcagtttgagcgatgattgttggagaaatatcgacagttttcctgtgattcct 11359309  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 845 - 960
Target Start/End: Complemental strand, 11338786 - 11338671
Alignment:
Q  845 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 944  Q
    ||||||||||||||||||||| |||||||||||||  |||||||   | || |||||| |||||||  |||||  |||||||||||||||||| |||||     
T  11338786 gattgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgctttcagccaactcttcaggttctt 11338687  T
Q  945 atggactgcctttgct 960  Q
     ||||| | |||||||    
T  11338686 ttggaccgactttgct 11338671  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 638 - 713
Target Start/End: Complemental strand, 11338980 - 11338905
Alignment:
Q  638 atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 713  Q
    |||||||||||| |||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11338980 atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11338905  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 845 - 960
Target Start/End: Complemental strand, 11345311 - 11345196
Alignment:
Q  845 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 944  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||   | || | |||||||||||| ||||||  |||||||||||||||||| |||||     
T  11345311 gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagctttcagccaactcttcaggttctt 11345212  T
Q  945 atggactgcctttgct 960  Q
     ||||| | |||||||    
T  11345211 ttggaccgactttgct 11345196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 845 - 960
Target Start/End: Complemental strand, 11359189 - 11359074
Alignment:
Q  845 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 944  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||  || || |||||||||||||| ||||||  |||| |||||||||||||| ||||     
T  11359189 gattgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgcttttagccaactcttcattttctt 11359090  T
Q  945 atggactgcctttgct 960  Q
     ||||| | |||||||    
T  11359089 ttggaccgactttgct 11359074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 849 - 960
Target Start/End: Complemental strand, 11339625 - 11339514
Alignment:
Q  849 gtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatgg 948  Q
    |||||||||||||| || | ||||||||| |  |||||||   |||| |||||||||||||| || ||  ||||||||||||||||||| |||||  |||    
T  11339625 gtttcccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatgaggtaccctactttcagccaactcttcaggttcttttgg 11339526  T
Q  949 actgcctttgct 960  Q
    || | |||||||    
T  11339525 accggctttgct 11339514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 11359916 - 11359865
Alignment:
Q  181 tgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaaca 232  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| ||||||||    
T  11359916 tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaaca 11359865  T

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Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 830 - 960
Target Start/End: Original strand, 36339960 - 36340090
Alignment:
Q  830 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagcca 929  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||  | |||||| | || || |||  | || |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  930 actcttcatgttctgatggactgcctttgct 960  Q
     ||||||  ||||||||||||||||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgct 36340090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 36339250 - 36339398
Alignment:
Q  123 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 222  Q
    |||||||| ||||||||||  || |||| ||||||||||||  ||| ||| || || |||||||||||||||||| ||||||||   ||| | || |||     
T  36339250 ctcatcgccgaaatcctattgttacttagcgtgaaaaccattgtgcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttca 36339349  T
Q  223 tacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcac 271  Q
    |  |||  ||||| ||||| |||||||||||||| ||| ||||||||||    
T  36339350 tcaaaatgcaccttaagaaatcttcacaaaaccctcacttcatactcac 36339398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 830 - 895
Target Start/End: Complemental strand, 25901504 - 25901439
Alignment:
Q  830 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 895  Q
    ||||||||||| |||||||||||| |||||||| || |||||| ||||||| || || ||||||||    
T  25901504 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacc 25901439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 830 - 880
Target Start/End: Complemental strand, 25915522 - 25915472
Alignment:
Q  830 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 880  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  25915522 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacac 25915472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 840 - 892
Target Start/End: Original strand, 5233 - 5285
Alignment:
Q  840 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 892  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  5233 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 4406 - 4494
Alignment:
Q  118 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 206  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  4406 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 4494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 23839864 - 23840000
Alignment:
Q  147 cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt 246  Q
    |||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||||   ||| |  |||  ||  ||||| |||| || ||||| |    
T  23839864 cttaacgtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgt 23839963  T
Q  247 cacaaaacccacacatcatactcacaccaccaacttt 283  Q
    || | ||||||||| ||||||||| ||||||||||||    
T  23839964 caaataacccacacctcatactcaaaccaccaacttt 23840000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 829 - 890
Target Start/End: Complemental strand, 23847398 - 23847337
Alignment:
Q  829 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttg 890  Q
    ||||||| ||| | |||||| ||||||||||||||||||| ||||||||||  |||||||||    
T  23847398 atgttgatcaactcgtgattctttcccttgatctttcgaccgagacatacatccaatttttg 23847337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 644 - 704
Target Start/End: Original strand, 3557376 - 3557436
Alignment:
Q  644 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccct 704  Q
    |||| |||| ||| ||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  3557376 aagtgaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 649 - 703
Target Start/End: Original strand, 3565399 - 3565453
Alignment:
Q  649 aggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccc 703  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  3565399 aggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 3565453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 830 - 880
Target Start/End: Complemental strand, 10571501 - 10571451
Alignment:
Q  830 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 880  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  10571501 tgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacac 10571451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 703
Target Start/End: Complemental strand, 1686691 - 1686646
Alignment:
Q  658 ttttcagtttaagtgataattgttggagaaatattgagagtttccc 703  Q
    ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  1686691 ttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 1686646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 842 - 895
Target Start/End: Original strand, 10467900 - 10467953
Alignment:
Q  842 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 895  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10467900 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10467953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 842 - 895
Target Start/End: Original strand, 10482038 - 10482091
Alignment:
Q  842 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 895  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10482038 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 4592 - 4738
Alignment:
Q  118 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgac 217  Q
    |||| ||| |||| |||||||||||||| ||| |||||||| |  | | | || | ||||| |||||||| ||||||||||| ||||||   ||| | |     
T  4592 acgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccat 4691  T
Q  218 cttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatca 264  Q
    |||||| ||||  ||||||||||| || |||||||||||||||||||    
T  4692 cttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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