View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_11 (Length: 330)
Name: NF3695_low_11
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 49825101 - 49825274
Alignment:
| Q |
3 |
agatggacatcatcagacacccgcttcacaacttagtcacgccatccatgcttcaagttgccatcagttatctcaactttaaacaannnnnnnn-gtcta |
101 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacatttttttgtcta |
49825200 |
T |
|
| Q |
102 |
tgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49825201 |
tgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtc |
49825274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 177 - 312
Target Start/End: Original strand, 49825703 - 49825838
Alignment:
| Q |
177 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatataaacaa |
276 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49825703 |
caaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacgaaatataaacaa |
49825802 |
T |
|
| Q |
277 |
acagcgttcaagggcgttgttaacagattgacgaaa |
312 |
Q |
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| T |
49825803 |
acggcgttcaagcgcgttgttaacagattgacgaaa |
49825838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 49234942 - 49235061
Alignment:
| Q |
185 |
gaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaacaaacagcgt |
283 |
Q |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||| |||| |
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| T |
49234942 |
gaggacgttagatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgataaatcttaaacgaaggaatataaaacaaacggcgt |
49235041 |
T |
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| Q |
284 |
tcaagggcgttgttaacaga |
303 |
Q |
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||||| |||||||||||| |
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| T |
49235042 |
tcaagaatgttgttaacaga |
49235061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 830302 - 830392
Alignment:
| Q |
183 |
gagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatataaa |
273 |
Q |
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||||| ||||| ||||||| || ||| |||| ||||||||||||||||||||||| ||||| | ||||| |||||| ||||||| |||| |
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| T |
830302 |
gagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaa |
830392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 941817 - 941955
Alignment:
| Q |
177 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaaca |
275 |
Q |
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|
||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
941817 |
caaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaaca |
941916 |
T |
|
| Q |
276 |
aacagcgttcaagggcgttgttaacagattgacgaaatg |
314 |
Q |
| |
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||| ||||||||| | |||||||||||||||||||||| |
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| T |
941917 |
aacggcgttcaagcgtattgttaacagattgacgaaatg |
941955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 50861736 - 50861611
Alignment:
| Q |
177 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaaca |
275 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
50861736 |
caaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgataaatcttaaacgacggaatataaaaca |
50861637 |
T |
|
| Q |
276 |
aacagcgttcaagggcgttgttaaca |
301 |
Q |
| |
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||| ||||||||| | | |||||||| |
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|
| T |
50861636 |
aacggcgttcaagcgtgctgttaaca |
50861611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 47934476 - 47934361
Alignment:
| Q |
192 |
ttagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaacaaacagcgttcaaggg |
290 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||| ||||||||| | |
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| T |
47934476 |
ttagatttaacaacacaaccaggaggaccataatcataaaaaccagcaacaaagagataaatcttaaacaacgaaatataaaacaaacggcgttcaagcg |
47934377 |
T |
|
| Q |
291 |
cgttgttaacagattg |
306 |
Q |
| |
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| ||| ||||||||| |
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| T |
47934376 |
cattgcaaacagattg |
47934361 |
T |
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