View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_12 (Length: 323)
Name: NF3695_low_12
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 35361601 - 35361309
Alignment:
| Q |
16 |
caataccgaatatcagaagagagatcacaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgcacacct |
115 |
Q |
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| T |
35361601 |
caataccgaatatcagaagagagatcacaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgcacacct |
35361502 |
T |
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| Q |
116 |
tgtagaatgacaacaaccataaagaagacgacgtgagtggttgggaaaactgtctggagcttggacctctaaattagtggggtttgaaatgcaaaataca |
215 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361501 |
tgtagaatgacaacaaccataaggaagacgacgcgagtggttgggaaaactgtatggagcttggacctctaaattagtggggtttgaaatgcaaaataca |
35361402 |
T |
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| Q |
216 |
taagagtattgttttacattttttaaggttcagaggggtcaattgaagttgaaccctaatggcttaagatcttatactgtactcatctcaagg |
308 |
Q |
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||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361401 |
taagagtattgttttacatttttaaggtttcagaggggtcaattgaagttgaaccctaatggcttaagatcttatactgtactcatctcaagg |
35361309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 13330556 - 13330656
Alignment:
| Q |
19 |
taccgaatatcagaagagagatcacaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgact-aaccctttgcacaccttg |
117 |
Q |
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|||| ||||| |||||||||| |||| || ||||||||||||||||||| | ||||||| |||||| |||| | || ||| || ||||||||||||||| |
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| T |
13330556 |
taccaaatatgagaagagagaacacagaaccaccaccaaccatcaaaattctgaaagatccggatgcatcacgagat-actcaaacctttgcacaccttg |
13330654 |
T |
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| Q |
118 |
ta |
119 |
Q |
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|| |
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| T |
13330655 |
ta |
13330656 |
T |
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