View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3695_low_13 (Length: 323)

Name: NF3695_low_13
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3695_low_13
NF3695_low_13
[»] chr8 (4 HSPs)
chr8 (64-197)||(37193273-37193406)
chr8 (64-197)||(37182143-37182274)
chr8 (251-283)||(3193523-3193555)
chr8 (115-191)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (63-197)||(21105366-21105500)
chr3 (131-197)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (68-195)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (68-195)||(10233990-10234117)
chr6 (70-138)||(4619835-4619903)
[»] chr2 (1 HSPs)
chr2 (251-285)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (70-138)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 37193273 - 37193406
Alignment:
Q  64 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 163  Q
    ||||||||||||||||||||  |||||| ||||||||  |||||| ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37193273 agcctgtgtttggaaactcatgaaaccacggtgaaaaatcacagtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37193372  T
Q  164 cgtgcattagcggtcactcaccgcacaaacaaac 197  Q
    |||||| ||||| |||||||||||||||||||||    
T  37193373 cgtgcagtagcgatcactcaccgcacaaacaaac 37193406  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 37182143 - 37182274
Alignment:
Q  64 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 163  Q
    ||||||||||||||||||||  ||| || ||||||||  ||  || ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37182143 agcctgtgtttggaaactcatgaaaacacggtgaaaaatca--gtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37182240  T
Q  164 cgtgcattagcggtcactcaccgcacaaacaaac 197  Q
    |||||| ||||| |||||||||||||||||||||    
T  37182241 cgtgcagtagcgatcactcaccgcacaaacaaac 37182274  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 3193523 - 3193555
Alignment:
Q  251 aatagattaaactagttgctctaaattatttaa 283  Q
    |||||||||||||||||||||||| ||||||||    
T  3193523 aatagattaaactagttgctctaatttatttaa 3193555  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 29461262 - 29461186
Alignment:
Q  115 aaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaa 191  Q
    |||||||||  | |||||||||||| |||| ||| |||| | || | |||||||  |||||||||||||||||||||    
T  29461262 aaagctacaccaactagcttctcaataccatggtaagatagactctaaacgtgcggtagcggtcactcaccgcacaa 29461186  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 21105366 - 21105500
Alignment:
Q  63 tagcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttga 162  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| || |||  |||||||||  | ||||||||| || ||||||||||||||| |||| |    
T  21105366 tagcatgtgtttgaaaactaacaaaaccatggtgaaaaggcacggttggcgtaaagctacaccaactagcttctaaataccacggtgagattgactttaa 21105465  T
Q  163 acgtgcattagcggtcactcaccgcacaaacaaac 197  Q
    || |||| |||||||||||||| ||||||||||||    
T  21105466 acatgcagtagcggtcactcacggcacaaacaaac 21105500  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 42036775 - 42036841
Alignment:
Q  131 gcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaaacaaac 197  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  42036775 gcttctcaaaaccacggtgatattgactttgaatgtgcattagcggtcactcaccgcacaaataaac 42036841  T

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Target: scaffold0495 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 10845 - 10718
Alignment:
Q  68 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 167  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10845 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10746  T
Q  168 cattagcggtcactcaccgcacaaacaa 195  Q
       |||||||||||||||| ||||||||    
T  10745 tggtagcggtcactcaccgtacaaacaa 10718  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 10234117 - 10233990
Alignment:
Q  68 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 167  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10234117 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10234018  T
Q  168 cattagcggtcactcaccgcacaaacaa 195  Q
       |||||||||||||||| ||||||||    
T  10234017 tggtagcggtcactcaccgtacaaacaa 10233990  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 4619835 - 4619903
Alignment:
Q  70 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 138  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  4619835 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 4619903  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 17854474 - 17854508
Alignment:
Q  251 aatagattaaactagttgctctaaattatttaatt 285  Q
    |||||||||||||||||||||||| ||||||||||    
T  17854474 aatagattaaactagttgctctaatttatttaatt 17854508  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 1037 - 969
Alignment:
Q  70 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 138  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  1037 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 969  T

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