View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_14 (Length: 251)
Name: NF3695_low_14
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 32355674 - 32355912
Alignment:
| Q |
8 |
gaagcaaaggagggaagcgttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgc |
107 |
Q |
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| T |
32355674 |
gaagcaaag-agggaagtgttagattaagttaaaaaaggactcgtggaagagttcagttgcaaacatgcacatgtctgtgggtgtatagtgtctacac-- |
32355770 |
T |
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| Q |
108 |
agaaaagcaagaagctaaagaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattat |
207 |
Q |
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| T |
32355771 |
agaaaagcaagaaactaaagaacattggcactcactttatctggctgaattgactcccaaatctcattgcatttattaacagcttgctcaaccaaattat |
32355870 |
T |
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| Q |
208 |
tatcatcccattgcatgaggtgggcatgcaataatgaagtgg |
249 |
Q |
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| T |
32355871 |
catcatcccattgcatgaggtgggcatgcaataatgaagtgg |
32355912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 42302664 - 42302763
Alignment:
| Q |
151 |
gctaaattgactccctaatctca-ttgcatttattaacagcttgctcaaccaaattattatcatcccattgcatgaggtgggcatgcaataatgaagtgg |
249 |
Q |
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| T |
42302664 |
gctaaattgactcccaaatctcatttgcacttattaacaactttctctacaaaattagtatcatctcgttacatgaggtcaaaatgcaatattgaagtgg |
42302763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 17921912 - 17922052
Alignment:
| Q |
109 |
gaaaagcaagaagctaaagaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattatt |
208 |
Q |
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| T |
17921912 |
gaaaagcaagaagttaaagaatatttgcactcacttgatcaggcagaattgactcccaaatctcattgcatttattaatagcttgagcaaccaaactatt |
17922011 |
T |
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| Q |
209 |
atcatcccattgcatgaggtgggcatgcaataatgaagtgg |
249 |
Q |
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| T |
17922012 |
atcatccgtatgcattaggcaagcatgcaataatgaagtgg |
17922052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 17955594 - 17955692
Alignment:
| Q |
27 |
ttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgcagaaaagcaagaagctaaa |
126 |
Q |
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| T |
17955594 |
ttagattaaattaaaaacggaatcatggt-----ttagttgcaaacatgcacatgtctgtgggtgtacattgtccacaaacggaaaagcaagatgttaaa |
17955688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 17969054 - 17969103
Alignment:
| Q |
33 |
taaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgt |
82 |
Q |
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| T |
17969054 |
taaattaaaaaaggaatcatagtagtgttcagttgaaaacatacacatgt |
17969103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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