View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3695_low_15 (Length: 249)

Name: NF3695_low_15
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3695_low_15
NF3695_low_15
[»] chr5 (16 HSPs)
chr5 (9-244)||(39468161-39468394)
chr5 (9-53)||(40147564-40147608)
chr5 (9-55)||(32637146-32637192)
chr5 (9-53)||(534081-534125)
chr5 (9-53)||(3075551-3075595)
chr5 (9-53)||(30682724-30682768)
chr5 (9-55)||(538343-538389)
chr5 (9-58)||(31183296-31183344)
chr5 (9-53)||(13488523-13488567)
chr5 (9-53)||(28750457-28750501)
chr5 (9-53)||(42426037-42426081)
chr5 (11-58)||(5887232-5887278)
chr5 (9-48)||(42428237-42428276)
chr5 (9-53)||(19806685-19806727)
chr5 (9-53)||(38747307-38747351)
chr5 (131-186)||(39468157-39468213)
[»] chr4 (16 HSPs)
chr4 (9-55)||(52467157-52467203)
chr4 (9-53)||(12739355-12739399)
chr4 (9-53)||(26175438-26175482)
chr4 (17-53)||(12743730-12743766)
chr4 (9-53)||(36994852-36994896)
chr4 (9-53)||(37740948-37740992)
chr4 (9-53)||(54199710-54199753)
chr4 (9-53)||(9927260-9927304)
chr4 (9-53)||(48893445-48893488)
chr4 (9-53)||(56178438-56178481)
chr4 (9-58)||(45686984-45687032)
chr4 (12-53)||(52095164-52095204)
chr4 (9-53)||(36463198-36463241)
chr4 (9-53)||(46147197-46147241)
chr4 (9-53)||(50262489-50262533)
chr4 (9-53)||(52082465-52082508)
[»] chr1 (12 HSPs)
chr1 (9-59)||(28220022-28220072)
chr1 (8-53)||(37559666-37559711)
chr1 (9-53)||(28223223-28223267)
chr1 (9-53)||(833972-834015)
chr1 (9-53)||(8550586-8550629)
chr1 (9-53)||(13137782-13137826)
chr1 (17-53)||(30476248-30476284)
chr1 (9-53)||(37503364-37503407)
chr1 (10-53)||(40122003-40122045)
chr1 (9-53)||(19752986-19753030)
chr1 (9-49)||(28265365-28265404)
chr1 (9-53)||(45644160-45644203)
[»] chr8 (11 HSPs)
chr8 (9-53)||(15213109-15213153)
chr8 (9-56)||(41366417-41366463)
chr8 (9-51)||(3303474-3303516)
chr8 (17-53)||(4743029-4743065)
chr8 (9-53)||(6599288-6599331)
chr8 (9-53)||(6674741-6674784)
chr8 (9-50)||(43036745-43036786)
chr8 (9-53)||(4731981-4732024)
chr8 (9-53)||(5689590-5689633)
chr8 (9-53)||(12702433-12702476)
chr8 (9-53)||(30143663-30143706)
[»] chr7 (20 HSPs)
chr7 (9-53)||(6430450-6430494)
chr7 (9-53)||(14069635-14069679)
chr7 (9-53)||(14379663-14379707)
chr7 (9-53)||(18126969-18127013)
chr7 (9-53)||(23555364-23555408)
chr7 (11-53)||(26417641-26417683)
chr7 (9-51)||(43864567-43864609)
chr7 (9-53)||(31732770-31732814)
chr7 (9-53)||(47675938-47675982)
chr7 (9-58)||(41648811-41648859)
chr7 (9-50)||(47673749-47673790)
chr7 (9-53)||(2360774-2360818)
chr7 (9-53)||(4510341-4510385)
chr7 (9-53)||(4512183-4512227)
chr7 (9-53)||(19502501-19502545)
chr7 (9-53)||(38671027-38671070)
chr7 (9-53)||(41317240-41317284)
chr7 (9-53)||(1113975-1114019)
chr7 (9-53)||(4586484-4586528)
chr7 (9-53)||(48489754-48489797)
[»] chr6 (3 HSPs)
chr6 (9-53)||(602905-602949)
chr6 (9-53)||(26954093-26954136)
chr6 (23-53)||(14521480-14521510)
[»] chr3 (17 HSPs)
chr3 (9-53)||(4160061-4160105)
chr3 (9-53)||(29813384-29813428)
chr3 (9-53)||(29196191-29196235)
chr3 (9-53)||(5236259-5236302)
chr3 (9-53)||(22834809-22834852)
chr3 (9-53)||(23391714-23391758)
chr3 (9-53)||(23410133-23410177)
chr3 (9-49)||(39153170-39153210)
chr3 (18-53)||(29811200-29811235)
chr3 (11-53)||(9666272-9666313)
chr3 (23-53)||(21350813-21350843)
chr3 (9-53)||(761167-761209)
chr3 (20-53)||(44330950-44330983)
chr3 (10-59)||(44700280-44700328)
chr3 (9-53)||(40734820-40734863)
chr3 (17-53)||(40913608-40913644)
chr3 (9-53)||(51399137-51399180)
[»] chr2 (15 HSPs)
chr2 (9-53)||(11690810-11690854)
chr2 (9-53)||(36317815-36317859)
chr2 (9-53)||(723549-723592)
chr2 (9-53)||(11151397-11151441)
chr2 (9-53)||(24885908-24885951)
chr2 (9-53)||(34139575-34139618)
chr2 (9-53)||(36987877-36987920)
chr2 (9-53)||(42362668-42362711)
chr2 (9-53)||(2334220-2334263)
chr2 (9-53)||(6594806-6594849)
chr2 (9-53)||(17057171-17057214)
chr2 (9-53)||(17085154-17085197)
chr2 (9-53)||(29868191-29868235)
chr2 (9-53)||(33162256-33162299)
chr2 (9-53)||(36773881-36773924)
[»] scaffold1668 (1 HSPs)
scaffold1668 (9-53)||(1303-1347)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 39468394 - 39468161
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaatccatgcccataattcatcaattcaatgaactactccattctcattcctc 108  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39468394 acatcatagtttgtattggtgtaagttttgagttcgaattcacaacagaatccatgcccataattcatcaattcaatgaactactccattctcattcctc 39468295  T
Q  109 tcatcttgccgccatcattgtttcttcttcaatctgcttttacatattctcttttgtctaatccctttgattttgcttttatcatcttcttgaatctgc- 207  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||     
T  39468294 tcatcttgccgccatcattgttt---cttcaatctgcttttacatattctcctttgtctaatcgctttgatattgcttttatcatcttcttgaatctgct 39468198  T
Q  208 tttttcatattctctcttgtctaatccctttgtttct 244  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  39468197 ttttttatattctctcttgtctaatccctttgattct 39468161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 40147564 - 40147608
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  40147564 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 40147608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 32637146 - 32637192
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaata 55  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  32637146 acatcatagtttgtattggtgtgagttttgaatccgaattcacaata 32637192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 534081 - 534125
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  534081 acatcatagtttctattggtgtgagttttgagtccgaattcacaa 534125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 3075595 - 3075551
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  3075595 acatcatagtttgtattggtgtgagtttttagtccgaattcacaa 3075551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 30682768 - 30682724
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||    
T  30682768 acatcatagtttgtattggtgtgagttttgagtccgtattcacaa 30682724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 538343 - 538389
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaata 55  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  538343 acatcatagtttatattggtgtgagttttgagtctgaattcacaata 538389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 31183296 - 31183344
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaa 58  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  31183296 acatcatggtttgtattggtgtga-ttttgagtccgaattcacaacaaaa 31183344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 13488523 - 13488567
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  |||||||||||||||| |||||||||||||||||||    
T  13488523 acatcatattttgtattggtgtgagatttgagtccgaattcacaa 13488567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 28750501 - 28750457
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  |||||||||||||||||||||||||| |||||||||    
T  28750501 acatcataatttgtattggtgtgagttttgagtccaaattcacaa 28750457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 42426081 - 42426037
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||    
T  42426081 acatcatagtttgtatttgtgtgagttttgagttcgaattcacaa 42426037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 5887278 - 5887232
Alignment:
Q  11 atcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaa 58  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  5887278 atcatagtttgtattggtgtga-ttttgagtccgaattcacaacaaaa 5887232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 42428276 - 42428237
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaatt 48  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  42428276 acatcatagtttgtattggtgtgagttttgagttcgaatt 42428237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19806685 - 19806727
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||    
T  19806685 acatcatagtttgtattggtg--agttttgagtccgaattcacaa 19806727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38747307 - 38747351
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  ||||||||| |||||||||    
T  38747307 acatcatagtttgtattggtgtgaaatttgagtccaaattcacaa 38747351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 39468213 - 39468157
Alignment:
Q  131 tcttcttcaatctgcttttac-atattctcttttgtctaatccctttgattttgctt 186  Q
    ||||||| |||||||||||   ||||||||| ||||||||||||||||||| |||||    
T  39468213 tcttcttgaatctgctttttttatattctctcttgtctaatccctttgattctgctt 39468157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 52467203 - 52467157
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaata 55  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  52467203 acatcatagtttgtattggtgtgagttttgagtccgaattcacaata 52467157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 12739399 - 12739355
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  12739399 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 12739355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 26175482 - 26175438
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  26175482 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 26175438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 12743766 - 12743730
Alignment:
Q  17 gtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  12743766 gtttgtattggtgtgagttttgagtccgaattcacaa 12743730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 36994852 - 36994896
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||    
T  36994852 acatcatagtttgtattggtgtgagttttgagtcagaattcacaa 36994896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 37740948 - 37740992
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  37740948 acatcatagtttgtattggtgtgagttttgagtccgaatttacaa 37740992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 54199753 - 54199710
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  54199753 acatcatcgtttgtattggtgtga-ttttgagtccgaattcacaa 54199710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 9927304 - 9927260
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||    
T  9927304 acatcatagtttatattggtgcgagttttgagtccgaattcacaa 9927260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 48893488 - 48893445
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  48893488 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 48893445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 56178481 - 56178438
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  56178481 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 45687032 - 45686984
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaa 58  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| ||||    
T  45687032 acatcatagtttgtattggtgtga-ttttgagtctgaattcacaacaaaa 45686984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 52095204 - 52095164
Alignment:
Q  12 tcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  52095204 tcatagtttgtattggtgtga-ttttgagtccgaattcacaa 52095164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 36463241 - 36463198
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||    
T  36463241 acatcatagtttgtattagtgtga-ttttgagtccgaattcacaa 36463198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 46147241 - 46147197
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||| |||||||||||||||||| | ||||||||||    
T  46147241 acatcatagtttgcattggtgtgagttttgaggcggaattcacaa 46147197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 50262533 - 50262489
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  |||||||| ||||||||||    
T  50262533 acatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 50262489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 52082508 - 52082465
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  52082508 acatcataatttgtattggtgtga-ttttgagtccgaattcacaa 52082465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 28220072 - 28220022
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaat 59  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  28220072 acatcatagtttgtattggtgtgagttttgagtccgaattcacaacaaaat 28220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 37559711 - 37559666
Alignment:
Q  8 gacatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  37559711 gacatcatagtttatattggtgtgagttttgagtccgaattcacaa 37559666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 28223267 - 28223223
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  28223267 acatcatagtttgtattggtctgagttttgagtccgaattcacaa 28223223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 834015 - 833972
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  834015 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 8550629 - 8550586
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  8550629 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 8550586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 13137826 - 13137782
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||    
T  13137826 acatcataatttgtattggtgtgagttttgagtccgaatttacaa 13137782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 30476284 - 30476248
Alignment:
Q  17 gtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30476284 gtttgtattggtgtgagttttgagttcgaattcacaa 30476248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 37503407 - 37503364
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  37503407 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 37503364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 40122045 - 40122003
Alignment:
Q  10 catcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  40122045 catcatagtttgtattggtgtga-ttttgagtccgaattcacaa 40122003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19752986 - 19753030
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  |||||||| ||||||||||    
T  19752986 acatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 19753030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 28265404 - 28265365
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattc 49  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  28265404 acatcatagtttgtattggtgtga-ttttgagtccgaattc 28265365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 45644203 - 45644160
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||    
T  45644203 acatcatagtttgtatttgtgtga-ttttgagtccgaattcacaa 45644160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 15213109 - 15213153
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  15213109 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 15213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 41366463 - 41366417
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataa 56  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  41366463 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaataa 41366417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 3303516 - 3303474
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcac 51  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  3303516 acatcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4743065 - 4743029
Alignment:
Q  17 gtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||||||||||||| |||||||||||||||||||    
T  4743065 gtttgtattggtgtgagatttgagtccgaattcacaa 4743029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 6599288 - 6599331
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  6599288 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 6599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 6674741 - 6674784
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  6674741 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 6674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 43036745 - 43036786
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattca 50  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  43036745 acatcattttttgtattggtgtgagttttgagtccaaattca 43036786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 4731981 - 4732024
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||    
T  4731981 acatcattgtttgtattggtgtga-ttttgagttcgaattcacaa 4732024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 5689590 - 5689633
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  5689590 acatcatagtttgtattggtgtga-ttttgagtcggaattcacaa 5689633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 12702476 - 12702433
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||    
T  12702476 acatcatagtttgtattgatgtga-ttttgagtccgaattcacaa 12702433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 30143663 - 30143706
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  30143663 acatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 30143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 6430450 - 6430494
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  6430450 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 6430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14069679 - 14069635
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  14069679 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 14069635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14379707 - 14379663
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  14379707 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 14379663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 18126969 - 18127013
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  18126969 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 18127013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 23555364 - 23555408
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  23555364 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 23555408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 26417641 - 26417683
Alignment:
Q  11 atcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  26417641 atcatagtttgtattggtgtgagttttgagtccgaattcacaa 26417683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 43864567 - 43864609
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcac 51  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  43864567 acatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 31732814 - 31732770
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
T  31732814 acatcatagtttgtactggtgtgagttttgagtccgaattcacaa 31732770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 47675982 - 47675938
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  47675982 acatcatagtttgtattggtgtgagttttgtgtccgaattcacaa 47675938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 41648859 - 41648811
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaa 58  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  41648859 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaacaaaa 41648811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 47673790 - 47673749
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattca 50  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  47673790 acatcatagtttgtattggtgtgagttttgtgtccgaattca 47673749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 2360818 - 2360774
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  2360818 acatcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4510385 - 4510341
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  4510385 acatcatagtttgtattggtgtgaaatttgagtccgaattcacaa 4510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4512227 - 4512183
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  4512227 acatcatagtttgtattggtgtgaaatttgagtccgaattcacaa 4512183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19502501 - 19502545
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||    
T  19502501 acatcatagtttgtattagtgtgagttttgagtctgaattcacaa 19502545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 38671070 - 38671027
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  38671070 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 38671027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 41317284 - 41317240
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  41317284 acatcatagtttgtattggtgtgagatttgagttcgaattcacaa 41317240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1113975 - 1114019
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||    
T  1113975 acatcatagtttgtattgatgtgagttttgattcggaattcacaa 1114019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 4586484 - 4586528
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||  ||||||||||| |||||||||||||||||||    
T  4586484 acatcatagtttacattggtgtgagatttgagtccgaattcacaa 4586528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 48489754 - 48489797
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||    
T  48489754 acatcatagttggtattggtgtga-ttttgagtccgaattcacaa 48489797  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 602949 - 602905
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  602949 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 26954136 - 26954093
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  26954136 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 26954093  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 14521510 - 14521480
Alignment:
Q  23 attggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||||||||||||||||||||||||||    
T  14521510 attggtgtgagttttgagtccgaattcacaa 14521480  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4160105 - 4160061
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 4160061  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29813384 - 29813428
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  29813384 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 29813428  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29196235 - 29196191
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||    
T  29196235 acatcatagtttgtattggtgtgagatttgagtccgaattcacaa 29196191  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 5236302 - 5236259
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  5236302 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 5236259  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22834852 - 22834809
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  22834852 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 22834809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23391758 - 23391714
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||| || |||||||||||    
T  23391758 acatcatagtttgtattggtgtgagttttgtgttcgaattcacaa 23391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23410177 - 23410133
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  23410177 acatcatagtttgtattgatgtgagttttgtgtccgaattcacaa 23410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39153210 - 39153170
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattc 49  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  39153210 acatcatagtttgtattggtgtgagttttgagcccgaattc 39153170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 29811200 - 29811235
Alignment:
Q  18 tttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||||||||||||||||||| |||||||||||    
T  29811200 tttgtattggtgtgagttttgagttcgaattcacaa 29811235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 9666313 - 9666272
Alignment:
Q  11 atcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  9666313 atcatagtttgtattggtgtga-ttttgagtccgaattcacaa 9666272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 21350843 - 21350813
Alignment:
Q  23 attggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||||||||||||||||||||||||||    
T  21350843 attggtgtgagttttgagtccgaattcacaa 21350813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 761167 - 761209
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  761167 acatcatagtttgtattggtgtga--tttgagtccgaattcacaa 761209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 44330950 - 44330983
Alignment:
Q  20 tgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||| |||||||||||||||||||||||||||||    
T  44330950 tgtactggtgtgagttttgagtccgaattcacaa 44330983  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 44700328 - 44700280
Alignment:
Q  10 catcatcgtttgtattggtgtgagttttgagtccgaattcacaataaaat 59  Q
    |||||| |||||||||||||||| ||||||||||||||||| || |||||    
T  44700328 catcatagtttgtattggtgtga-ttttgagtccgaattcaaaacaaaat 44700280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 40734820 - 40734863
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||    
T  40734820 acatcatagtttgtattggtgtga-ttttgagaccgaattcacaa 40734863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 40913608 - 40913644
Alignment:
Q  17 gtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||||||||||||  |||||||||||||||||||    
T  40913608 gtttgtattggtgtgaaatttgagtccgaattcacaa 40913644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 51399137 - 51399180
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  51399137 acatcatagtttgtattggtatga-ttttgagtccgaattcacaa 51399180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 11690810 - 11690854
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  11690810 acatcatagtttgtattggtgtgagttttgagtccgaattcacaa 11690854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 36317859 - 36317815
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  36317859 acatcattgtttgtattggtgtgagttttgagtccaaattcacaa 36317815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 723592 - 723549
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  723592 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 723549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 11151441 - 11151397
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||    
T  11151441 acatcatagtttgtattggtatgagttttgagttcgaattcacaa 11151397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 24885908 - 24885951
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  24885908 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 24885951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 34139618 - 34139575
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  34139618 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 34139575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 36987920 - 36987877
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  36987920 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 36987877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 42362668 - 42362711
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  42362668 acatcatagtttgtattggtgtga-ttttgagtccgaattcacaa 42362711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 2334263 - 2334220
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  2334263 acatcatagtttgtattggtgtga-ttttgagtctgaattcacaa 2334220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 6594849 - 6594806
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  6594849 acatcatagtttgtattggtgtga-ttttgagtccaaattcacaa 6594806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 17057214 - 17057171
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  17057214 acatcatattttgtattggtgtga-ttttgagtccgaattcacaa 17057171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 17085197 - 17085154
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  17085197 acatcatattttgtattggtgtga-ttttgagtccgaattcacaa 17085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29868191 - 29868235
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||| |||||  |||||||||||||||||||    
T  29868191 acatcatagtttgtattgctgtgaaatttgagtccgaattcacaa 29868235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 33162299 - 33162256
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||    
T  33162299 acatcatagtttgtattgatgtga-ttttgagtccgaattcacaa 33162256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 36773881 - 36773924
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||    
T  36773881 acatcatagtttgtattggtgtga-ttttgaatccgaattcacaa 36773924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 1347 - 1303
Alignment:
Q  9 acatcatcgtttgtattggtgtgagttttgagtccgaattcacaa 53  Q
    ||||||| | |||||||||||||||||||| || |||||||||||    
T  1347 acatcatagattgtattggtgtgagttttgtgttcgaattcacaa 1303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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