View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3695_low_2 (Length: 738)
Name: NF3695_low_2
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Complemental strand, 32400426 - 32399700
Alignment:
| Q |
1 |
aattgggttgtttttattataggcatttttccagagatggtggaggcagcaaagtaaagctaagaaacttaaagtcaaagatcttgtcaactcgggtcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400426 |
aattgggttgtttttattataggcatttttccagagatggtggaggcagcaaagtaaagctaagaaacttaaagtcaaagatcttgtcaactcgggtcag |
32400327 |
T |
|
| Q |
101 |
ctcgaattcatgtaatctacttactagcttctatatcaatgcttttcaaattcatgcatgtactttaaaattcaccaaaattagtaagtcaaaatcttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32400326 |
ctcgaattcatgtaatctacttactagcttctatatcaatgcttttcaaattcatgcatgtactttaaaactcaccaaaattagtaagtcaaaatcttta |
32400227 |
T |
|
| Q |
201 |
gatgaagatcagacagttcatattttaagttggataaatcagatttttgaatgcaagctgtttgattgtcatttagtgactttgtgttattttggttgca |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400226 |
gatgaagatcagacagttcagattttaagttggataaatcagatttttgaatgcaagctgtttgattgtcatttagtgactttgtgttattttggttgca |
32400127 |
T |
|
| Q |
301 |
gggaatccaatggatttccatgattaatggttctacatagattagatttagatgcaagttggtgacttttgaatttgattatcatgttattgttgnnnnn |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32400126 |
gggaatccaatggatttccatgattaatggttctacatagattagatttagatgcaagttggtgacttttgaatttgattattatgttattgttgttttt |
32400027 |
T |
|
| Q |
401 |
nnnnnnnngaagaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32400026 |
ggttttttgaagaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaa |
32399927 |
T |
|
| Q |
501 |
gatgagtttggtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32399926 |
gatgagtttggtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
32399827 |
T |
|
| Q |
601 |
tttctttcttgctaattgttgatgtagcaggcttgaatgcactagatcggatcactagcacaatcatgttaaagttgcgacgtgtcattatgaatttcta |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32399826 |
tttctttcttgctaattgttgatgtagcaggcttgaatgcactagattggatcactagcacaatcatgttaaagttgcgacgtgtcattatgaatttcta |
32399727 |
T |
|
| Q |
701 |
agtcctatgtaattgtgtctgtgctgc |
727 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
32399726 |
agtcctatgtgattgtgtctgtgctgc |
32399700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 571
Target Start/End: Complemental strand, 32385617 - 32385496
Alignment:
| Q |
450 |
cattacattgacctgattgatcagaccactcttgggcatcaatttatcaaagatgagtttggtaagaatccaagagttggctggcagattgatccgtttg |
549 |
Q |
| |
|
|||||||| ||| ||||||||||||| || ||||| || | |||| | ||||| ||||| | | || ||||||| |||| ||||| ||||| ||||||| |
|
|
| T |
32385617 |
cattacatagacatgattgatcagactacacttggacaccgatttctgaaagaggagttcgatttgactccaagaattggttggcaaattgacccgtttg |
32385518 |
T |
|
| Q |
550 |
gccattctgcagttcaggctta |
571 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
32385517 |
gacattctgctgtgcaggctta |
32385496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 411 - 600
Target Start/End: Complemental strand, 45067758 - 45067569
Alignment:
| Q |
411 |
agaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaagatgagtttg |
510 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| | | |||||||||||| ||||||||||||| || ||||| |||| ||| |||||||| | || | |
|
|
| T |
45067758 |
agaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagaagtattcg |
45067659 |
T |
|
| Q |
511 |
gtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
600 |
Q |
| |
|
| | | ||||||| | || ||||| |||||||| ||||| ||||||||||| ||||| |||||| | ||||| ||||||| || ||||| |
|
|
| T |
45067658 |
ggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgtt |
45067569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 29816218 - 29816255
Alignment:
| Q |
191 |
aaaatctttagatgaagatcagacagttcatattttaa |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
29816218 |
aaaacctttagatgaagatcagacagtttatattttaa |
29816255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University