View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_3 (Length: 616)
Name: NF3695_low_3
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 217 - 595
Target Start/End: Complemental strand, 46932033 - 46931655
Alignment:
| Q |
217 |
tgatcaagatttaagaactaatttacatacaagttggagaattaccaccaccaagagattaaggatgatcatgatcttctttttcttgatttgggattat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46932033 |
tgatcaagatttaagaactaatttacatacaagttggataattaccaccaccaagagattaaggatgatcatgatcttctttttcttgatttgggattat |
46931934 |
T |
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| Q |
317 |
ttgatttatgtgttgaagaagcagcaactggtttaccaaacaaaccacaaaaaccacatgttgcaaccttaggagaaggtgggtcaattgatgttggtgc |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46931933 |
ttgatttatgtgctgaagaagcagcaactggtttaccaaacaaaccacaaaaaccacatgttgcaaccttaggagaaggtgggtcaattgatgttggtgc |
46931834 |
T |
|
| Q |
417 |
aacgttgaccgatcgatatggtcttgctccagctgatctgcttctctccaacgtgccagttgatgcactctcttgttctagttgattctgattcaaacca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46931833 |
aacgttgaccgatcgatatggtcttgctccagctgatctgcttctctccaacgtaccagttgatgcactctcttgttctagttgattctgattcaaacca |
46931734 |
T |
|
| Q |
517 |
gacaagaatttatcatcccaaaccaatcctgatgaaccttgtctcctgaatgatgctaatgatttctgcagctcagcca |
595 |
Q |
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| T |
46931733 |
gacaagaatttatcatcccaaaccaatcctgatgaaccttgtctcctgaatgatgctaatgatttctgcagctcagcca |
46931655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 46932213 - 46932108
Alignment:
| Q |
51 |
agcttggaactctaaaccaaaatct--gagacaaaatttgagcaaaccttatttcacacggagatagtacatccatatgttctacgaatttacacaattt |
148 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46932213 |
agcttggaactctaaaccaaaatctttgagacaaaatttgagcaaaccttatttcacacggagatagtacatccatatgttctacgaatttacacaattt |
46932114 |
T |
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| Q |
149 |
aacacc |
154 |
Q |
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|||||| |
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| T |
46932113 |
aacacc |
46932108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 570
Target Start/End: Complemental strand, 44510360 - 44510317
Alignment:
| Q |
527 |
tatcatcccaaaccaatcctgatgaaccttgtctcctgaatgat |
570 |
Q |
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| T |
44510360 |
tatcatcccaaacaaaccctgatgaaccttgtcttctgaatgat |
44510317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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