View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3695_low_4 (Length: 460)

Name: NF3695_low_4
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3695_low_4
NF3695_low_4
[»] chr6 (3 HSPs)
chr6 (10-436)||(16405211-16405637)
chr6 (153-239)||(20349068-20349154)
chr6 (63-103)||(14321792-14321832)
[»] chr5 (7 HSPs)
chr5 (124-239)||(2412725-2412840)
chr5 (124-213)||(35194014-35194103)
chr5 (125-167)||(15564612-15564654)
chr5 (123-193)||(40187702-40187771)
chr5 (66-98)||(12709436-12709468)
chr5 (66-98)||(12770686-12770718)
chr5 (147-227)||(38972920-38973000)
[»] chr3 (5 HSPs)
chr3 (124-239)||(53631879-53631994)
chr3 (152-215)||(44953457-44953520)
chr3 (164-239)||(48305639-48305714)
chr3 (124-218)||(48390836-48390930)
chr3 (63-136)||(14208638-14208711)
[»] chr8 (7 HSPs)
chr8 (132-218)||(8545368-8545454)
chr8 (124-237)||(14186295-14186408)
chr8 (130-218)||(9476032-9476120)
chr8 (155-218)||(27932419-27932482)
chr8 (152-218)||(37960981-37961047)
chr8 (150-239)||(27777196-27777285)
chr8 (158-227)||(39445586-39445655)
[»] chr1 (8 HSPs)
chr1 (124-218)||(29871304-29871398)
chr1 (124-239)||(9982888-9983003)
chr1 (124-239)||(42439668-42439783)
chr1 (155-227)||(19572522-19572594)
chr1 (152-239)||(34673280-34673367)
chr1 (142-238)||(16903517-16903613)
chr1 (150-218)||(39219260-39219328)
chr1 (124-216)||(40087484-40087576)
[»] chr4 (4 HSPs)
chr4 (152-218)||(32585498-32585564)
chr4 (18-103)||(38263166-38263251)
chr4 (132-216)||(42907875-42907959)
chr4 (65-139)||(46058078-46058154)
[»] scaffold0036 (1 HSPs)
scaffold0036 (124-239)||(33368-33483)
[»] chr7 (4 HSPs)
chr7 (124-215)||(16866149-16866240)
chr7 (123-185)||(3774048-3774110)
chr7 (125-218)||(27850345-27850438)
chr7 (158-218)||(10072480-10072540)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-235)||(107393-107523)
[»] scaffold1322 (1 HSPs)
scaffold1322 (63-108)||(1036-1081)
[»] chr2 (4 HSPs)
chr2 (158-239)||(22900804-22900885)
chr2 (64-117)||(25210304-25210357)
chr2 (64-108)||(13531876-13531920)
chr2 (64-108)||(30696851-30696895)
[»] scaffold0007 (1 HSPs)
scaffold0007 (175-235)||(197329-197389)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 16405637 - 16405211
Alignment:
Q  10 aggagcagagagaaaactcgagcaaatgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaggatttgaatttctatttttatagaatga 109  Q
    ||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  16405637 aggagaagagagaaaactcgagtgagtgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaaggtttgaatttctatttttatagaatga 16405538  T
Q  110 gcaacaaagtggcaataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtg 209  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  16405537 gcaataaagtggcaataaagtaattttctaatttcgggacgggtttgagtatgagttcagggtgtgtacatatatctctggtacttgttccgtatccgtg 16405438  T
Q  210 ttttgaaattcggaaaaattcaaacccatatactagtcaaagcggggaaacccatcaaattgaggttagttcgggtggataaccatggctaagagtttta 309  Q
    |||||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16405437 ttttgaaattcggaaaaactcaaacccatatactagtcaaagtgtggaaacccttcaaattgaggttagttcgggtggataaccatggctaagagtttta 16405338  T
Q  310 ctgccatgcttataaggtagttagtttgcacactcaaatgaacttaggatccaaaactaacaaatcttcatgttacaaggttgaaatctaaaaagaaact 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  16405337 ctgccatgcttataaggtagttagtttgcacactcaaatgaacttaggatccaaaactaatgaatcttcatgttacaaggttgaaatctaaaaagaaact 16405238  T
Q  410 tttaatgtaataaacatgaatttgtta 436  Q
    |||||||||||||||| ||||||||||    
T  16405237 tttaatgtaataaacacgaatttgtta 16405211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 20349068 - 20349154
Alignment:
Q  153 tttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 239  Q
    |||| |||||||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||||  || ||||| ||||| ||||    
T  20349068 tttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcata 20349154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 14321792 - 14321832
Alignment:
Q  63 cgtgagtgaaatgatttaggatttgaatttctatttttata 103  Q
    |||||||||||||||||| ||||||| ||||||||| ||||    
T  14321792 cgtgagtgaaatgatttaagatttgagtttctatttatata 14321832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 2412840 - 2412725
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    |||||||||||||||   | ||||| ||||||| ||||  ||||||| || |||| |||||  |||||| || | ||||| ||||||||||||||| |||    
T  2412840 ataaagtaattttctgcatacgggacgagtttgggtattggttcaggatgggtacatatatacccgttatttatcccatacccgtgttttgaaattggga 2412741  T
Q  224 aaaattcaaacccata 239  Q
    ||||||||||||||||    
T  2412740 aaaattcaaacccata 2412725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 35194103 - 35194014
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgtttt 213  Q
    ||||||||||||||||  ||||||| | |||||||||||||||  ||||| ||||||||||  |||||||  || ||||| |||||||||    
T  35194103 ataaagtaattttctacattcgggacgggtttgagtatgagtttggggtgggtacctatatacccgttacccgtcccatacccgtgtttt 35194014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 15564612 - 15564654
Alignment:
Q  125 taaagtaattttctaatttcgggatgagtttgagtatgagttc 167  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  15564612 taaagtaattttctacattcgggacgagtttgagtatgagttc 15564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 40187771 - 40187702
Alignment:
Q  123 aataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttac 193  Q
    |||||| ||||||||||  ||||||| ||||||| |||||||||  |||||  ||||||||||||||||||    
T  40187771 aataaattaattttctatattcgggacgagtttgggtatgagttt-gggtgaatacctatatctccgttac 40187702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 12709436 - 12709468
Alignment:
Q  66 gagtgaaatgatttaggatttgaatttctattt 98  Q
    ||||||||||||||||| |||||||||||||||    
T  12709436 gagtgaaatgatttagggtttgaatttctattt 12709468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 12770686 - 12770718
Alignment:
Q  66 gagtgaaatgatttaggatttgaatttctattt 98  Q
    ||||||||||||||||| |||||||||||||||    
T  12770686 gagtgaaatgatttagggtttgaatttctattt 12770718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 38972920 - 38973000
Alignment:
Q  147 gatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 227  Q
    |||| ||||||||||| |||| ||||| ||||||||||  ||||||| | | ||||| || |||||||||||  |||||||    
T  38972920 gatgggtttgagtatgggttcggggtgggtacctatattcccgttacctatcccatacccatgttttgaaatcgggaaaaa 38973000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 53631879 - 53631994
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    ||||||||||||||||  ||||||| ||||||||||||| |||| ||||| ||||||||||  |||||||  ||  ||||  |||||||| ||||| ||     
T  53631879 ataaagtaattttctagattcgggacgagtttgagtatgggttcggggtgggtacctatatacccgttacccgtctcatacacgtgttttaaaatttggg 53631978  T
Q  224 aaaattcaaacccata 239  Q
    |||| |||||||||||    
T  53631979 aaaactcaaacccata 53631994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 44953520 - 44953457
Alignment:
Q  152 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttga 215  Q
    |||||||||||||||| ||||| ||||||||||  |||||||  || ||||| |||||||||||    
T  44953520 gtttgagtatgagttcggggtgagtacctatatacccgttacccgtcccatacccgtgttttga 44953457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 48305714 - 48305639
Alignment:
Q  164 gttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 239  Q
    |||| ||||| ||||||||||  ||| |||| |||||||| ||||||||||||||| || |||| ||| |||||||    
T  48305714 gttcggggtgggtacctatatacccgatactcgttccatacccgtgttttgaaattggggaaaactcatacccata 48305639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 48390930 - 48390836
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||||||||||| ||  ||||||| | || || ||||| ||||||| || ||||||||||  |||||||  || ||||| ||||||||||||||    
T  48390930 ataaagtaattttttacgttcgggacgggtatgggtatgggttcaggatgggtacctatattcccgttacccgtcccatacccgtgttttgaaat 48390836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 14208638 - 14208711
Alignment:
Q  63 cgtgagtgaaatgatttaggatttgaatttctatttttatagaatgagcaacaaagtggcaataaagtaatttt 136  Q
    ||||||||||||  |||| | ||||| ||||| ||| |||| || ||||||||||| || ||||||||||||||    
T  14208638 cgtgagtgaaattgtttaaggtttgagtttctttttatataaaaggagcaacaaaggggtaataaagtaatttt 14208711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 8545454 - 8545368
Alignment:
Q  132 attttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||||||  || |||| ||||||||||||| |||| ||||| ||| ||||||| |||||||| |||||||| ||||||||||||||    
T  8545454 attttctacatttgggacgagtttgagtatgggttcggggtgggtatctatatccccgttactcgttccatacccgtgttttgaaat 8545368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 14186295 - 14186408
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    ||||| ||||||||||  ||| ||| | ||||| ||||| |||||||||| |||||||||| ||||||||   | ||||| ||||||||||||||   ||    
T  14186295 ataaattaattttctacattcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcgaga 14186394  T
Q  224 aaaattcaaaccca 237  Q
    |||| |||||||||    
T  14186395 aaaactcaaaccca 14186408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 9476120 - 9476032
Alignment:
Q  130 taattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||||||||  ||||||||| ||||| ||||| ||||  |||| |||  |||||| ||||||||||| || ||||||| |||||||||    
T  9476120 taattttctacattcgggatgggtttgggtatgggttcgaggtgggtatttatatccccgttacttgtcccgtatccgttttttgaaat 9476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 27932419 - 27932482
Alignment:
Q  155 tgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    |||||||| |||| ||||| ||||||||||  |||||||| || ||||| ||||||||||||||    
T  27932419 tgagtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgaaat 27932482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 37961047 - 37960981
Alignment:
Q  152 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||| |||||||||| ||||||||||||||||  | ||||| ||| ||||| ||||||||| ||||    
T  37961047 gtttgggtatgagttcggggtgtgtacctatatacctgttacctgtcccatacccgtgtttttaaat 37960981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 27777285 - 27777196
Alignment:
Q  150 gagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 239  Q
    ||||||| ||||| |||| ||||| |||||| |||||| ||||| ||| || || | ||||||||||||  ||||||| |||||| ||||    
T  27777285 gagtttgggtatgggttcggggtgggtacctgtatctctgttacctgtcccgtacctgtgttttgaaatcgggaaaaactcaaacacata 27777196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 39445655 - 39445586
Alignment:
Q  158 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 227  Q
    |||||||||| ||||| |||||||||   ||||||| ||| ||||| ||||||||||||||  |||||||    
T  39445655 gtatgagttcggggtgggtacctataaacccgttacctgtcccatacccgtgttttgaaatcgggaaaaa 39445586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 29871398 - 29871304
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||| ||||||||||  ||||||| | ||||| |||||||||||||||| ||||||||||  | ||||| ||| ||||| || |||||||||||    
T  29871398 ataaaataattttctacattcgggacgggtttgggtatgagttcagggtgggtacctatataccagttacctgtcccatacccatgttttgaaat 29871304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 9983003 - 9982888
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    |||||||||||||||   ||||||||| ||||| ||||| |||| ||||| ||||||||||   ||||||   | ||||  ||||||||||||||| ||     
T  9983003 ataaagtaattttctgcattcgggatgggtttgggtatgggttcggggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattgggg 9982904  T
Q  224 aaaattcaaacccata 239  Q
    ||||||||||| ||||    
T  9982903 aaaattcaaactcata 9982888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 42439783 - 42439668
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    ||||||||||||| ||  || ||||||||||||  |||| |||| ||||| ||||||||||  |||||||| || ||||| || |||||||| ||  | |    
T  42439783 ataaagtaattttttacatttgggatgagtttggatatgggttcggggtgggtacctatatacccgttactcgtcccatacccatgttttgagatcggaa 42439684  T
Q  224 aaaattcaaacccata 239  Q
    |||||||| |||||||    
T  42439683 aaaattcatacccata 42439668  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 19572594 - 19572522
Alignment:
Q  155 tgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 227  Q
    |||||||| |||| ||||| ||||||||||  ||||||| ||| ||||| ||||||||||||||  |||||||    
T  19572594 tgagtatgggttcggggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcgggaaaaa 19572522  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 34673367 - 34673280
Alignment:
Q  152 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 239  Q
    ||||| ||||| |||| ||||| ||||||||||  |||||||  ||  |||| ||||||||||||||| |||||||  ||||||||||    
T  34673367 gtttgggtatgggttcggggtgggtacctatatacccgttaccagtctcatacccgtgttttgaaattgggaaaaacccaaacccata 34673280  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 16903517 - 16903613
Alignment:
Q  142 ttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccat 238  Q
    ||||||| | ||||| |||||||||| ||||| ||||||||||| || |||| | | || ||  |||||||| ||||| ||||||||  ||||||||    
T  16903517 ttcgggacgggtttgggtatgagttcggggtgggtacctatatccccattacctatcccgtactcgtgttttaaaattgggaaaaatctaaacccat 16903613  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 39219260 - 39219328
Alignment:
Q  150 gagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||||| ||||| |||| ||||| |||| | |||| |||||||||||||| || ||||||||| ||||    
T  39219260 gagtttgggtatgggttcggggtgggtacatgtatccccgttacttgttccgtacccgtgttttaaaat 39219328  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 40087576 - 40087484
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaa 216  Q
    ||||||||||||| ||  || |||| | || ||||||||||||| ||||| ||||||||||  ||||||||  | ||||| | ||||||||||    
T  40087576 ataaagtaattttttacatttgggacgggtatgagtatgagttcggggtgggtacctatattcccgttactcatcccatacctgtgttttgaa 40087484  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 32585498 - 32585564
Alignment:
Q  152 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||| ||||| |||||||||| ||||||||||  ||||||| ||| ||||| ||||||||||||||    
T  32585498 gtttgggtatgggttcagggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaat 32585564  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38263251 - 38263166
Alignment:
Q  18 agagaaaactcgagcaaatgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaggatttgaatttctatttttata 103  Q
    ||||| |||||||| || |||||| ||| || |||||| ||| | ||||||||||||| |||| | ||||| ||||||||||||||    
T  38263251 agagagaactcgagtaagtgtcgtctgagagttacactctgactacgtgagtgaaatggtttaaggtttgagtttctatttttata 38263166  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 42907875 - 42907959
Alignment:
Q  132 attttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaa 216  Q
    ||||||||  ||||||| ||||||| ||||| | || ||||| ||||||||||| || ||||| || || |||||||||||||||    
T  42907875 attttctacattcgggacgagtttgggtatgggctcggggtgggtacctatatccccattactcgtcccgtatccgtgttttgaa 42907959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 46058078 - 46058154
Alignment:
Q  65 tgagtgaaatgatttaggatttgaatttctatttttat--agaatgagcaacaaagtggcaataaagtaattttcta 139  Q
    ||||||||||||||||   ||||| |||||||||||||  | ||||| ||| ||||||| |||||| ||||||||||    
T  46058078 tgagtgaaatgatttaccgtttgagtttctatttttatacaaaatgaacaataaagtggtaataaattaattttcta 46058154  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 33368 - 33483
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 223  Q
    |||||||| ||||||   ||||||| ||||||| ||||| |||| ||||| |||| |||||  |||||||  || ||||| ||||||||||||||  ||     
T  33368 ataaagtagttttctgcattcgggacgagtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcgggg 33467  T
Q  224 aaaattcaaacccata 239  Q
    ||||  ||||||||||    
T  33468 aaaacccaaacccata 33483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 16866149 - 16866240
Alignment:
Q  124 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttga 215  Q
    ||||||||||||| ||  || |||| | ||||| ||||| |||| ||||| ||||||||||  |||||||| || ||||| |||||||||||    
T  16866149 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttga 16866240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 3774048 - 3774110
Alignment:
Q  123 aataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatc 185  Q
    |||||| | ||||||||| ||||||| |  |||||||||| |||||||||| |||||||||||    
T  3774048 aataaattgattttctaaattcgggacggatttgagtatgggttcagggtgggtacctatatc 3774110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 27850438 - 27850345
Alignment:
Q  125 taaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    |||||||||||||||  ||||||| | ||||| ||||| |||| || || |||||||||   |||||||  || ||||| ||||||||||||||    
T  27850438 taaagtaattttctacattcgggacgggtttgggtatgggttcgggatgggtacctatacacccgttacccgtcccatacccgtgttttgaaat 27850345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 10072480 - 10072540
Alignment:
Q  158 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 218  Q
    ||||| |||| ||||| ||||||||||  |||||||  |||||||| ||||||||||||||    
T  10072480 gtatgggttcggggtgggtacctatatacccgttacccgttccatacccgtgttttgaaat 10072540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 107523 - 107393
Alignment:
Q  105 aatgagcaacaaagtggcaataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatat 204  Q
    ||||||||| ||  ||| ||||||||||||||| |  ||||| | |||||||| ||||||||| ||||| |||| |||||||  | |||  || |||||     
T  107523 aatgagcaataatatggtaataaagtaattttcaacattcggaacgagtttgaatatgagttcggggtgggtacttatatctatgctacccgtcccatac 107424  T
Q  205 ccgtgttttgaaattcggaaaaattcaaacc 235  Q
    | ||||||||||||   |||||| |||||||    
T  107423 ctgtgttttgaaatcgagaaaaactcaaacc 107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 1036 - 1081
Alignment:
Q  63 cgtgagtgaaatgatttaggatttgaatttctatttttatagaatg 108  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||    
T  1036 cgtgagtgaaatgatttaagatttgagtttctatttatataaaatg 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 22900804 - 22900885
Alignment:
Q  158 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 239  Q
    |||||||||| ||||| |||  |||| | |||||||| || ||||| ||||||||||||||  |||||||  ||||||||||    
T  22900804 gtatgagttcggggtgggtatatataaccccgttactcgtcccatacccgtgttttgaaatcgggaaaaacccaaacccata 22900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 25210304 - 25210357
Alignment:
Q  64 gtgagtgaaatgatttaggatttgaatttctatttttatagaatgagcaacaaa 117  Q
    ||||||||||||||||||| ||||| ||||||||| |||| |||| | ||||||    
T  25210304 gtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaa 25210357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 13531876 - 13531920
Alignment:
Q  64 gtgagtgaaatgatttaggatttgaatttctatttttatagaatg 108  Q
    ||||||||||||||||||| ||||| ||||||||| |||| ||||    
T  13531876 gtgagtgaaatgatttagggtttgagtttctatttatataaaatg 13531920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 30696851 - 30696895
Alignment:
Q  64 gtgagtgaaatgatttaggatttgaatttctatttttatagaatg 108  Q
    |||||||| |||||||||| ||||||||||||||| |||| ||||    
T  30696851 gtgagtgacatgatttagggtttgaatttctatttatataaaatg 30696895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 197389 - 197329
Alignment:
Q  175 gtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacc 235  Q
    ||||||||||  | |||||||||  |||||||||||||||||||  ||||||| |||||||    
T  197389 gtacctatatgcctgttacttgtctcatatccgtgttttgaaatagggaaaaactcaaacc 197329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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