View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_5 (Length: 423)
Name: NF3695_low_5
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 6372079 - 6371673
Alignment:
| Q |
7 |
tgagatgaagtgcatgtactcaatagtcaacaccctaataaagaaaagtttcatttttctttcatttagaacaatggaaggaaagagaaagagcaaaaag |
106 |
Q |
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| T |
6372079 |
tgagatgaagtgcatgtactcaatagtcaacaccctaataaagaaaagtttcatttttctttcatttagaacaatggaaggaaagagaaagagcaaaaag |
6371980 |
T |
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| Q |
107 |
aatactaacaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatctt |
206 |
Q |
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| T |
6371979 |
aatactaacaagttgttgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctcccgtgatctt |
6371880 |
T |
|
| Q |
207 |
cttccacttcccatttgaaacatgataagagaatgaaatagttcaaagtttcaagcttttttgttttagcaggagaacaacaagaagac--agaaaaaga |
304 |
Q |
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| T |
6371879 |
cttccacttcccatttgaaacatgataagagaatgaaatagttcaaagtttcaagcttttttgttttagcaggagaacaacaagaagacaaagaaaaaga |
6371780 |
T |
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| Q |
305 |
aactattttttattcaccaacttcagttatacaatgtttggttgttaagctgtttcaaagacataacaaattggggtgaggaacatgacaaaaaactcaa |
404 |
Q |
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| T |
6371779 |
cactattttttattcaccaacttcagttatacaatgtttggttgttaagctgtttcaaagacataacaaattggggtgaggaacatgacaaaaaactcaa |
6371680 |
T |
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| Q |
405 |
atttttg |
411 |
Q |
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||||||| |
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| T |
6371679 |
atttttg |
6371673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 6414368 - 6414276
Alignment:
| Q |
109 |
tactaacaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc |
198 |
Q |
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| T |
6414368 |
tacttacaggttgttgttgaaaattggtggtgctatgaagaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctccc |
6414276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 6427021 - 6426923
Alignment:
| Q |
106 |
gaatactaacaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatc |
204 |
Q |
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| T |
6427021 |
gaatactaacaagttgttgttgaaaatcagtgttgcgaagaaattgagtgaaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgatc |
6426923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 6403432 - 6403334
Alignment:
| Q |
114 |
acaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatcttcttcca |
212 |
Q |
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| T |
6403432 |
acaagttgttgttgaaaatcaaaggtgctaagaaatagagtgaaatggatgaattgaaaatggttccagtaaatatcttcctcccaagatctacttcca |
6403334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 6346943 - 6346865
Alignment:
| Q |
109 |
tactaacaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaat |
187 |
Q |
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|||| ||||||| || ||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
6346943 |
tacttacaagttgatggtgaaaatcggtgatgctcagaaaaagggtgaaatggatgaactgaaaatgggtccaataaat |
6346865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 6357884 - 6357832
Alignment:
| Q |
151 |
gggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||| |||| |
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| T |
6357884 |
gggtgaaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgat |
6357832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 6356456 - 6356364
Alignment:
| Q |
109 |
tactaacaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc |
198 |
Q |
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|||| ||||||| ||||||||||| ||||||| | |||||| || ||||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
6356456 |
tactcacaagttgttgttgaaaatcggtggtggtttgaagaaattggatgaaatgaatgaactgaaaatgggtccagtaaatctctttctccc |
6356364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 6397255 - 6397187
Alignment:
| Q |
144 |
agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatcttcttcca |
212 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| |||||||||| ||||| |||| ||||| |||||| |
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| T |
6397255 |
agaaattgggtgaaatggatgaactggaaatgggtccagtaaatatcttcttcccaagatctgcttcca |
6397187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 6379560 - 6379501
Alignment:
| Q |
144 |
agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat |
203 |
Q |
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|||||| |||||||||||||||| || |||||| |||||||||| |||||||||| |||| |
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| T |
6379560 |
agaaattgggtgaaatggatgaattggaaatgggtccagtaaatgtcttcctcccatgat |
6379501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 6366168 - 6366076
Alignment:
| Q |
114 |
acaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat |
203 |
Q |
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||||||| ||||||||||| ||||||||| ||||| | ||| ||||||||||| ||||||||| ||| |||||||||||||||| |||| |
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| T |
6366168 |
acaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgat |
6366076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 6419745 - 6419677
Alignment:
| Q |
144 |
agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatcttcttcca |
212 |
Q |
| |
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|||||| |||||||||| ||||||||||||| | |||||||||| ||||| |||| ||||| |||||| |
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| T |
6419745 |
agaaattgggtgaaatgaatgaactgaaaattgttccagtaaatatcttcttcccaggatctgcttcca |
6419677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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