View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3695_low_6 (Length: 410)
Name: NF3695_low_6
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 48 - 367
Target Start/End: Original strand, 46932219 - 46932522
Alignment:
| Q |
48 |
tttcgtgtgttgataattttccaattaatcgcaatttcaatagacctttttacttttagagttccttcactttttgtctcaaatgattatctagctagat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
46932219 |
tttcgtgtgttgataattttccaattaatcgcaatttcaatagacctttttacttttagagttccttcactttttgtctcaattgattatctagataga- |
46932317 |
T |
|
| Q |
148 |
acactttcgtaataattaaagtgttgtcaactacgtttgtaaatgttagatacactttttgtcgnnnnnnntgttaggatacccttctcgtctcaattat |
247 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
46932318 |
---ctttcgtaataattaaagtgtt------------tgtaaatgttagatacactttttgtcgaaaaaaatgttaggatacgcttctcgtctcaattat |
46932402 |
T |
|
| Q |
248 |
ccagcttgtctcaactgaatgataatcttgaattcgaaaattctaacattttttaggtagaattctgtcgttcatgtcgtttatctggctagaaaatagt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46932403 |
ccagcttgtctcaactgaatgataatcttgaattcgaaaatcctaacattttttaggtggaattctgtcgttcatgtcgtttatctggctagaaaatagt |
46932502 |
T |
|
| Q |
348 |
gatacctcaaactattctta |
367 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
46932503 |
gatacctaaaactattctta |
46932522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University