View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_8 (Length: 371)
Name: NF3695_low_8
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 2558588 - 2558230
Alignment:
| Q |
1 |
agaaatgatgaagatgaagaaaaaggatnnnnnnn-taggtagtatggcgcactattaaatacaatagacatataaaatctaacggtttattttttaaca |
99 |
Q |
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| T |
2558588 |
agaaatgatgaagatgaagaaaaaggataaaaaaaataggtagtatggtgcactattaaatacaatagacatataaaatctaatggtttattttttaaca |
2558489 |
T |
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| Q |
100 |
aaaagattaaatggttacaattnnnnnnn-ttaataaagtctttggtggcagattaaaatgttggaccaacttaaatacttccgttcataccatatagtg |
198 |
Q |
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| T |
2558488 |
aaaagattaaatggttacaattaaaaaaaattaataaagtctttggtggcagattaaaatgttggacgaacttaaatacttccgttcataccatatagtg |
2558389 |
T |
|
| Q |
199 |
gtatgttcacttttctatctgtggaatttgtttatgataaatagcttaatggatatgtaaataacaatcaagttttataaccaagatttcattatggttg |
298 |
Q |
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| T |
2558388 |
gtatgttcacttttctatctgtggaatttgtttatgataaatagcttaatggatatgtaaataacagtcaagttttataaccaagatttcattatggttg |
2558289 |
T |
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| Q |
299 |
tttggttggaacctagattgtttgaagtgatcctctgatcccctattacaccaattatg |
357 |
Q |
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| T |
2558288 |
tttggttggaacctagattgtttgaagtgatcctctgatcccctattacaccaattatg |
2558230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 175 - 357
Target Start/End: Complemental strand, 2578737 - 2578551
Alignment:
| Q |
175 |
tacttccgttcataccatatagtggtatgttcacttttctatctgtggaatttgtttatgataaatagcttaatggatatgtaaat--------aacaat |
266 |
Q |
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| T |
2578737 |
tacttccgttcataccata--gtggtatgttcacttttctatctgtggaatttgtttatgataaatagctcaatgaatatgtaaatataataaaaacaat |
2578640 |
T |
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| Q |
267 |
caagttttataaccaagatttcattatggttgtttggttggaacctagattgtttgaagtgatcctctgatcccctattacaccaattatg |
357 |
Q |
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| T |
2578639 |
caagttctataacaaagatttcattatggttctttgattggaacctagattgttcgaagtgatcctctgat--cctattacaccatttatg |
2578551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 27759358 - 27759321
Alignment:
| Q |
84 |
ggtttattttttaacaaaaagattaaatggttacaatt |
121 |
Q |
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|||||| |||||||||||||||||||||||||| |||| |
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| T |
27759358 |
ggtttaatttttaacaaaaagattaaatggttaaaatt |
27759321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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