View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3695_low_9 (Length: 347)
Name: NF3695_low_9
Description: NF3695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3695_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 33580832 - 33580691
Alignment:
| Q |
149 |
ccctttcttctttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatgttgcatgt |
248 |
Q |
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| T |
33580832 |
ccctttcttctttccttcccttattcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcactcatgttgcatgt |
33580733 |
T |
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| Q |
249 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
290 |
Q |
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| T |
33580732 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
33580691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 32356106 - 32355958
Alignment:
| Q |
180 |
tcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatg-----ttgcatgtgtgcaatgctctagtttgctaaaata |
274 |
Q |
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| T |
32356106 |
tcatcactttcatcttttataccagcttctattatgacaattttactacttttcacacatgttgcattgcatgtgtgcaatgctctagtttgctaaaata |
32356007 |
T |
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| Q |
275 |
aatggtactccaattatgtcgagagtttgctataatattaccatctgac |
323 |
Q |
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| T |
32356006 |
aagggtactccagttgtgcttttagtttgctataataatgccatctgac |
32355958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33580981 - 33580930
Alignment:
| Q |
1 |
gattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
52 |
Q |
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| T |
33580981 |
gattcattagttcacttaattcttacaactaattggtagaaccttctggaag |
33580930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32356289 - 32356238
Alignment:
| Q |
1 |
gattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
52 |
Q |
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| T |
32356289 |
gattcattagtttacttaattcttacaactaatacgtagaaccttctggaag |
32356238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 17969315 - 17969247
Alignment:
| Q |
159 |
tttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttactt |
227 |
Q |
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||||||| |||| |||| |||| ||||||||||||||||||| | ||||||||| ||||||| ||||| |
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| T |
17969315 |
tttccttatcttattctttactcgtcactttcatcttttatacgttcttctattacgacaattctactt |
17969247 |
T |
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