View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_high_11 (Length: 336)
Name: NF3696_high_11
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 34281771 - 34282089
Alignment:
| Q |
10 |
gatcatgttaatttctcatatctacagcatctatatgttgaaatataatcggatacatgtataaaaatagtttacgtcaacattaatgtaacaaattaaa |
109 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34281771 |
gatcatgttaatttctcatatctacaacgtctatatgttgaaatataatcagatacatgtataaaaatagtttacgtcaacattaatgtaacaaattaaa |
34281870 |
T |
|
| Q |
110 |
ttcttataatatatttcctcaaaaacgattaaatctatataacatatacttcaaatcattt-----nnnnnnnnnnntgtaatacttaccttcatatatt |
204 |
Q |
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| T |
34281871 |
ttcttataatatatttcctcaaaaa-aattaaatctatataacatatatatcaaatcatttaaaaaaattaaaattttgtaatacttaccttcatatatt |
34281969 |
T |
|
| Q |
205 |
tttcttcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaacttaaactggtgcaaagaggtcttcat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
34281970 |
tttcttcaacaatttcaattgcgagatactctaagttagggcaactcgttagcataaatgtgatttcctcaaacttaaactaatgtaaagaggtcttcat |
34282069 |
T |
|
| Q |
305 |
tatcaaatgtttcaccttca |
324 |
Q |
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|||||||||||||||||||| |
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| T |
34282070 |
tatcaaatgtttcaccttca |
34282089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 34297484 - 34297804
Alignment:
| Q |
11 |
atcatgttaatttctcatatctacagcatctatatgttgaaatataatcggatacatgtataaaaatagtttacgtcaacattaatgta-acaaattaaa |
109 |
Q |
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||||||||||| ||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||| | | ||||||||||| |||||| ||| |
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| T |
34297484 |
atcatgttaatgtcttatatctacaatatctatatgttgaaatattatcagatgcatgtataaaaatagtttatgccgacattaatgtatacaaatcaaa |
34297583 |
T |
|
| Q |
110 |
ttcttataatatatttcctcaaaaacgattaaatctatataacatatacttcaaatcattt-----nnnnnnnnnnntgtaatacttaccttcatatatt |
204 |
Q |
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|||||||||||||| ||| |||| |||||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||| |
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| T |
34297584 |
ttcttataatatataccctgtaaaaaaattaaatctatataacatgtacagcaaatcatttaaaaaaaattaaattttgtattacttacattcatatatc |
34297683 |
T |
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| Q |
205 |
tttcttcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaacttaaactggtgcaaagaggtcttcat |
304 |
Q |
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||| |||||||||||||||| ||||| ||| | || ||| | || || |||| ||||||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
34297684 |
ttttctcaacaatttcaattgtgagatgctcaagattggggcagctgtttagcatgaatgtgattccctaaaactcaaactggtgcaaagaggtcttcat |
34297783 |
T |
|
| Q |
305 |
tatcaaatgtttcaccttcat |
325 |
Q |
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||||| ||||||||||||||| |
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| T |
34297784 |
tatcatatgtttcaccttcat |
34297804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 38 - 325
Target Start/End: Original strand, 34288207 - 34288501
Alignment:
| Q |
38 |
atctatatgttgaaatataatcggatacatgtataaaaatagtttacgtcaacattaatgta-acaaattaaattcttataatatatttcctcaaaaacg |
136 |
Q |
| |
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|||||||||||| ||||||||| |||| ||||||||||| | |||| | | ||||| ||||| |||||||||||||||||||||||| |||| ||| |
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| T |
34288207 |
atctatatgttggaatataatcagataaatgtataaaaacaatttatgccgacattgatgtatacaaattaaattcttataatatatgccctcttaaaaa |
34288306 |
T |
|
| Q |
137 |
attaaatctatataacatatacttcaaatcatttnnnnnnnnnnn------tgtaatacttaccttcatatatttttcttcaacaatttcaattgcgaga |
230 |
Q |
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| T |
34288307 |
attaaatctatataacatatacaccaaatcattcaaatcaaattaaatttttgtaatacttacattcatatattttttctcaacaatttcaattgtgaga |
34288406 |
T |
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| Q |
231 |
tactctaagttagggaaactcgtttgcataaatgtgatttcctcaaacttaaactggtgcaaagaggtcttcattatcaaatgtttcaccttcat |
325 |
Q |
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| T |
34288407 |
tgctctaggttagggcagctctttagcatgaatgcgattccctcaaactcaagcgggtgcaaaaaggtcttcattatcaaatgtttcaccttcat |
34288501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 10330851 - 10330966
Alignment:
| Q |
210 |
tcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaacttaaactggtgcaaagaggtcttcattatca |
309 |
Q |
| |
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|||||||||||||||| |||| ||||||| ||| ||||| || |||| |||| |||| || ||||| ||| | |||||||| ||||||||||||| |
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| T |
10330851 |
tcaacaatttcaattgtgagacgttctaagtcggggcaactctttagcatgaatgagattcccataaactcaaatttgtgcaaagcagtcttcattatca |
10330950 |
T |
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| Q |
310 |
aatgtttcaccttcat |
325 |
Q |
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|||| |||||| |||| |
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| T |
10330951 |
aatgcttcaccctcat |
10330966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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