View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_high_12 (Length: 326)
Name: NF3696_high_12
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 13161119 - 13160811
Alignment:
| Q |
1 |
tgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaaatataagtttctgtagcccaaggcc |
100 |
Q |
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| T |
13161119 |
tgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaaatataagtttctgtagcccaaggcc |
13161020 |
T |
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| Q |
101 |
ttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatacgtgcgttgtcatatgaagtagccgcccctccatcagagggccaaccact |
200 |
Q |
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| T |
13161019 |
ttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatacgtgcgttgtcatatgaagtagccgcccctccatcagagggccaaccact |
13160920 |
T |
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| Q |
201 |
ctcagatacaacaacgttcacccaaccaatcccggtgttatctagggctgcatgcaccgaatccaacatagcatcaaacaagttttggtacccatttgga |
300 |
Q |
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| T |
13160919 |
ctcagatacaacaacgttcacccaaccaatcccggtgttatctagggctgcatgcaccgaatccaacatagcatcaaacaagttttggtacccatttgga |
13160820 |
T |
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| Q |
301 |
ccatcttgt |
309 |
Q |
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| T |
13160819 |
ccatcttgt |
13160811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13152119 - 13152185
Alignment:
| Q |
1 |
tgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
67 |
Q |
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| T |
13152119 |
tgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca |
13152185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13145358 - 13145421
Alignment:
| Q |
4 |
ttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
67 |
Q |
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| T |
13145358 |
ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaaca |
13145421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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