View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_high_17 (Length: 268)
Name: NF3696_high_17
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 13161644 - 13161411
Alignment:
| Q |
10 |
catcatcatccccctttatatcaagtcaagtgaaggggaaatcaatatatacctaaaatccaaccgtgtgtgtgtggaaatcaatattgaacacaaattt |
109 |
Q |
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| T |
13161644 |
catcctcatccccctttatatcaagtcaagtgaaggggaaatcaatatatacctaaaatccaaccgtgtgtgtgtggaaatcaatattgaacacaaattt |
13161545 |
T |
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| Q |
110 |
tgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctatataaggaaaaca |
209 |
Q |
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| T |
13161544 |
tgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctatataaggaaaaca |
13161445 |
T |
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| Q |
210 |
gaaaaaatgcatcacgaaatcgaaattaatcagt |
243 |
Q |
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| T |
13161444 |
gaaaaaatgcatcacgaaatcgaaattaatcagt |
13161411 |
T |
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