View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_high_20 (Length: 251)
Name: NF3696_high_20
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_high_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 18103009 - 18102935
Alignment:
| Q |
177 |
tggttaatcatgcatgaataggcacctccaacctcaactcaactatggtttcttggacatggttattgtaatgac |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18103009 |
tggttaatcatgcatgaataggcacctccaacctcaactcaactatggtttcttggacatggttattgtaatgac |
18102935 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 37860618 - 37860544
Alignment:
| Q |
177 |
tggttaatcatgcatgaataggcacctccaacctcaactcaactatggtttcttggacatggttattgtaatgac |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37860618 |
tggttaatcatgcatgaataggcacctccaacctcaactcaactatggtttcttggacatggttattgtaatgac |
37860544 |
T |
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