View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_1 (Length: 641)
Name: NF3696_low_1
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 24439864 - 24440475
Alignment:
| Q |
1 |
ataaaataaatttaatatcaatataaacaaaatatatctagtattaatatttagtaccactatgatttataaataattgatttttgtattaattctagga |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439864 |
ataaaatacatttaatatcaatataaacaaaatatatctagtattaatatttagtaccactatgatttataaataattgatttttgtattaattctagga |
24439963 |
T |
|
| Q |
101 |
ttgttaccacttattagtgatgatgcttggggaacctgcttccatagaggctagctagcttcgcccttttcgtgttcnnnnnnnnnnctctctatttttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
24439964 |
ttgttaccacttattagtgatgatgcttggggaacctgcttccatagaggctagctagcttcgcccttttcgtgttcttttttt----tctctgtttttt |
24440059 |
T |
|
| Q |
201 |
cccctataacnnnnnnnnnnctacttaatactcattttaccaactctaaggtggctcacgaattagcacccaattaggttgtgcattttatgggagtatt |
300 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24440060 |
cccctataacaaaaaaaaaactacttaatactcattttaccaactctaaggtggctcatgaattagcacccaattaggttgtgcattttatgggagtatt |
24440159 |
T |
|
| Q |
301 |
tggtcacatagtctaaaacggttaggtattcacctagcgagcctgttgcatcttttagaccacttcattcaatttgaaaaatataggaggcgactctaat |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
24440160 |
tggtcacatagtctaaaacggttaggtattcacctagcgagcctgttgcatcttttagaccacttca----------aaaatataggaggtgactctaat |
24440249 |
T |
|
| Q |
401 |
ttggttgtcctgtgtttgagttacttggaaggaaagaaattgtcatattttttcaataaaaacagtttccaattcatcatttaattggcaaagtgaagga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24440250 |
ttggttgtcctgtgtttgagttacttggaaggaaagaaattttcatattttttcagtaaaaacagtttccaattcatcatttaattggcaaagtgaagga |
24440349 |
T |
|
| Q |
501 |
actatctttttgatggttgagatacaaataaatgagaatttagcttttgatcttcattaacgatggattaacactctttaatgtttcggtgttgtcacct |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24440350 |
actatctttttgatggttgagatacaaataaatgagaatttagcttttgatcttcattaacgatggattaacactctttaatgtttcggtgttgtcacct |
24440449 |
T |
|
| Q |
601 |
tgcaagtgttttgatggttttctctt |
626 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
24440450 |
tgcaagtgttttgatggttttctctt |
24440475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 26241487 - 26241411
Alignment:
| Q |
101 |
ttgttaccacttattagtgatgatgcttggggaacctgcttccatagaggctagctagcttcgcccttttcgtgttc |
177 |
Q |
| |
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||||||| |||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
26241487 |
ttgttactgcttattaggggtgatgcttggggaacctacttccctagaggctagctagcttcgcccttttcgtgttc |
26241411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 32105864 - 32105784
Alignment:
| Q |
97 |
aggattgttaccacttattagtgatgatgcttggggaacctgcttccatagaggctagctagcttcgcccttttcgtgttc |
177 |
Q |
| |
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|||| ||||||| |||||||| ||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
32105864 |
aggactgttaccgcttattagggatgatgcttgtagaacctactttcccagaggctagctagcttcgcccttttcgtgttc |
32105784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 2126795 - 2126725
Alignment:
| Q |
101 |
ttgttaccacttattagtgatgatgcttggggaacctgcttccatagaggctagctagcttcgcccttttc |
171 |
Q |
| |
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|||||||| |||||||| |||||||||| |||||||| |||| ||||| || ||||||||||||||||| |
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| T |
2126795 |
ttgttaccgcttattagagatgatgcttagggaacctatttcccaagaggttaactagcttcgcccttttc |
2126725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 35345131 - 35345185
Alignment:
| Q |
399 |
atttggttgtcctgtgtttgagttacttggaaggaaagaaattgtcatatttttt |
453 |
Q |
| |
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|||||||||||||| |||||| ||| ||| ||| ||||||||||||||||||||| |
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| T |
35345131 |
atttggttgtcctgcgtttgacttatttgaaagaaaagaaattgtcatatttttt |
35345185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 13156142 - 13156198
Alignment:
| Q |
397 |
taatttggttgtcctgtgtttgagttacttggaaggaaagaaattgtcatatttttt |
453 |
Q |
| |
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||||||||||||| ||||||||||||| || |||||||| ||| |||| ||||||| |
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|
| T |
13156142 |
taatttggttgtcttgtgtttgagttatttagaaggaaatgaatagtcacatttttt |
13156198 |
T |
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