View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_10 (Length: 406)
Name: NF3696_low_10
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 43451212 - 43451591
Alignment:
| Q |
18 |
attgatgccactaagaaacgggaaaaccgatgaggactgaattttctatgcttgctgttttagttttttagtgctaagtgatgaatatgtcctgtaggaa |
117 |
Q |
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| T |
43451212 |
attgatgccactaagaaacgggaaaaccaatgaggactgaattttctatgcttgctgttttagttttttagtgctaagtgatgaatatgtcctgtaggaa |
43451311 |
T |
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| Q |
118 |
aaagacaaaaatgtagcattgttggagcctcgacaaagccaaagccaaaacaaggaacaaattcaaaccatcttcaaagaatccagggggtacgtatatt |
217 |
Q |
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| T |
43451312 |
aaagacaaaaatgtagcattgttggagcctcgacaaagccaaagccaaaacaaggaacaaattcaaaccatcttcaaagaatccagggggtacgtatatt |
43451411 |
T |
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| Q |
218 |
aaaaaaccattcttcaatattttgttgtctgatacattttctttaacttggattcttcctgctcctagctccccagattatccaatggcagactatgaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451412 |
aaaaaaccattcttcaatattttgttgtctgatgcattttctttaacttggattcttcctgctcctagctccccagattatccaatggcagactatgaaa |
43451511 |
T |
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| Q |
318 |
acacgccgccacatggaagtgggaaacaaacacctcctaaagacttcgtctgtccaataaccagtaacatatttgatgat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451512 |
acacgccgccacatggaagtgggaaacaaacacctcctaaagacttcgtctgtccaataaccagtaacatatttgatgat |
43451591 |
T |
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