View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_11 (Length: 381)
Name: NF3696_low_11
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 175 - 364
Target Start/End: Complemental strand, 41607314 - 41607121
Alignment:
| Q |
175 |
tggaagatacatattaattaattaataaataatgaaggagaaaagttgaaaatgttgcggctctaaattccatttcgaattcaaaatgtggcaagtagcc |
274 |
Q |
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| T |
41607314 |
tggaagatacatattaattaataaataaataatcaatgagaaaagttgaaaatgttgcggctctaaattccatttccaattcaaaatgtggcaagcagcc |
41607215 |
T |
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| Q |
275 |
cgaggttagagtctaaccgtttagaatagacgctacttctccggcaacaacacataggac----ttacgttttatctccaattccatttcccat |
364 |
Q |
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| T |
41607214 |
cgaggttagagtctaaccgtttagaatagacgctacttctccggcaacaacacataggacttacttacgttttatctccaattcccattcccat |
41607121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 41607456 - 41607391
Alignment:
| Q |
18 |
gaatgtcaaaagagtgttaaaaaattagtgttgttaccctttc-gatgtttgaaataagcaaataa |
82 |
Q |
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| T |
41607456 |
gaatgtgaaaagagtgttaaaaaattagtgttgttaccctttctgatgtttgaaataggcaaataa |
41607391 |
T |
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