View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_18 (Length: 283)

Name: NF3696_low_18
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_18
NF3696_low_18
[»] chr4 (8 HSPs)
chr4 (10-283)||(18102672-18102949)
chr4 (207-277)||(56329081-56329151)
chr4 (123-207)||(14271028-14271111)
chr4 (28-126)||(56329225-56329323)
chr4 (207-268)||(39322718-39322779)
chr4 (66-129)||(41496090-41496153)
chr4 (46-100)||(130978-131033)
chr4 (159-266)||(24899227-24899339)
[»] chr2 (5 HSPs)
chr2 (10-283)||(37860281-37860558)
chr2 (38-97)||(44512549-44512608)
chr2 (48-114)||(16644346-16644412)
chr2 (207-275)||(45134846-45134914)
chr2 (12-100)||(45134656-45134743)
[»] chr3 (3 HSPs)
chr3 (30-230)||(5411360-5411553)
chr3 (184-279)||(34330274-34330371)
chr3 (208-277)||(38086135-38086204)
[»] chr1 (1 HSPs)
chr1 (91-251)||(47895797-47895958)
[»] chr6 (4 HSPs)
chr6 (28-277)||(33293433-33293675)
chr6 (28-125)||(1825919-1826014)
chr6 (56-100)||(33246734-33246778)
chr6 (138-238)||(12636131-12636233)
[»] chr8 (1 HSPs)
chr8 (82-199)||(39587286-39587403)
[»] scaffold0012 (1 HSPs)
scaffold0012 (66-237)||(177463-177636)
[»] chr7 (2 HSPs)
chr7 (58-97)||(33524775-33524814)
chr7 (28-80)||(22620738-22620790)
[»] chr5 (1 HSPs)
chr5 (56-95)||(41364713-41364752)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 18102672 - 18102949
Alignment:
Q  10 attattctaaaagggagcaaaagctacaactatatcattctaacataactaaattcttca----ttcattcatttaataatgattacaatgaccactaca 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||    
T  18102672 attactctaaaagggagcaaaagctacaactatatcattctaacataactaaattcttcattcattcattcatttgataatgattacaatgaccactaca 18102771  T
Q  106 ttatttatagcgttgacattctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactcatctctaatatatct 205  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  18102772 taatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctctacacccttctaaaacatgatgactcacctctaatatatct 18102871  T
Q  206 aacaactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcattacagtaacc 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18102872 aacaactaactcatcataatctttacctacttggactactctattatattaggtctatcttgggtcattacaataacc 18102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 56329151 - 56329081
Alignment:
Q  207 acaactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcattaca 277  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||| ||||||    
T  56329151 acaactaactcatcataatctttacctacttggactactctattatattgggtttatcttaggttattaca 56329081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 14271028 - 14271111
Alignment:
Q  123 attctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactcatctctaatatatctaa 207  Q
    ||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||| ||||||||||  |||||| ||||||||    
T  14271028 attctaacaatttaaccaatgactcatcataatggatctctctagatccttctaaaagatgatgactc-gctctaaaatatctaa 14271111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 56329323 - 56329225
Alignment:
Q  28 aaaagctacaactatatcattctaacataactaaattcttcattcattcatttaataatgattacaatgaccactacattatttatagcgttgacattc 126  Q
    ||||| |||||||| |  ||| |||||||| || ||||| ||||||||||||| |||||||||| ||||||||    |||||||||||| |||||||||    
T  56329323 aaaagttacaactacaatattgtaacataattatattctccattcattcatttgataatgattataatgaccaaccaattatttatagcattgacattc 56329225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 39322718 - 39322779
Alignment:
Q  207 acaactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgg 268  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||||| ||| ||||||||    
T  39322718 acaactaactcatcataatctttacatatttggactattctattatattgggtttatcttgg 39322779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 41496153 - 41496090
Alignment:
Q  66 ttcattcattcatttaataatgattacaatgaccactacattatttatagcgttgacattctaa 129  Q
    ||||||||||||||| |||| ||||||||||||||   || |||||||||| ||||||||||||    
T  41496153 ttcattcattcatttgataaggattacaatgaccaacccactatttatagcattgacattctaa 41496090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 130978 - 131033
Alignment:
Q  46 attctaacataactaaatt-cttcattcattcatttaataatgattacaatgacca 100  Q
    |||||||| |||||||||| |||||||||||||||| ||||| ||| |||||||||    
T  130978 attctaacctaactaaatttcttcattcattcatttgataatcatttcaatgacca 131033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 24899339 - 24899227
Alignment:
Q  159 tctctctagacccttctaaaacatgatgactcatctctaatatatctaa----caactaactcatcataatcttt-acctacttgaactactctattata 253  Q
    |||||||||| |||| ||||||||||||||||| |||||| |||| ||     ||| |||||||||||||||||| | ||| |||| ||| | |||| ||    
T  24899339 tctctctagatccttttaaaacatgatgactcacctctaaaatatgtataattcaattaactcatcataatctttaatctagttgagctattatattcta 24899240  T
Q  254 ttaggtctatctt 266  Q
    || ||||||||||    
T  24899239 ttgggtctatctt 24899227  T

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Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 37860281 - 37860558
Alignment:
Q  10 attattctaaaagggagcaaaagctacaactatatcattctaacataactaaattcttca----ttcattcatttaataatgattacaatgaccactaca 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||    
T  37860281 attactctaaaagggagcaaaagctacaactatatcattctaacataactaaattcttcattcattcattcatttgataatgattacaatgaccactaca 37860380  T
Q  106 ttatttatagcgttgacattctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactcatctctaatatatct 205  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  37860381 taatttatagcattgacattctaagaattaaaccaatgactcatcataacgggtctctctacacccttctaaaacatgatgactcacctctaatatatct 37860480  T
Q  206 aacaactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcattacagtaacc 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  37860481 aacaactaactcatcataatctttacctacttggactactctattatattaggtctatcttgggtcattacaataacc 37860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 44512608 - 44512549
Alignment:
Q  38 actatatcattctaacataactaaattcttcattcattcatttaataatgattacaatga 97  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| ||||| || |||||||    
T  44512608 actatattattctaacataattaaatttttcattcattcatttgataatcataacaatga 44512549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 16644346 - 16644412
Alignment:
Q  48 tctaacataactaaattcttcattcattcatttaataatgattacaatgaccactacattatttata 114  Q
    |||| ||||||||| ||||||||||||| |||| ||||| ||||||||||  | |||||||||||||    
T  16644346 tctatcataactaatttcttcattcatttatttgataataattacaatgattattacattatttata 16644412  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 45134846 - 45134914
Alignment:
Q  207 acaactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcatta 275  Q
    |||||||||||||| ||||||||||||| ||  |||||| |||||||||  | ||||||| ||||||||    
T  45134846 acaactaactcatcgtaatctttacctatttagactactttattatattgagcctatcttaggtcatta 45134914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 45134656 - 45134743
Alignment:
Q  12 tattctaaaagggagcaaaagctacaactatatcattctaacataactaaattcttcattcattcatttaataatgattacaatgacca 100  Q
    ||||||||||| ||| | |||||| ||||| |  | ||||||| |||||| || ||||||||||||||| ||| |||||||||| ||||    
T  45134656 tattctaaaagagagaataagctaaaactaaactaatctaaca-aactaatttattcattcattcatttgatattgattacaataacca 45134743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 5411553 - 5411360
Alignment:
Q  30 aagctacaactatatc-attctaacataactaaattcttc---attcattcatttaataatgattacaatgaccactacattatttatagcgttgacatt 125  Q
    |||||||||||||| | ||||||||| |||||||||||||   |||||||||||| |||||| ||||||||| |||||||||||||||| | ||| ||||    
T  5411553 aagctacaactataactattctaaca-aactaaattcttcttcattcattcatttgataatgtttacaatgagcactacattatttatatcattggcatt 5411455  T
Q  126 ctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactcatctctaatatatctaa--caactaactcatcata 223  Q
                 |||||||||||||||| || |||||||||| ||||||| |||||||||||||  |||||| ||||||||  |||| |||||||||||    
T  5411454 a------------caatgactcatcataaaggatctctctagatccttctagaacatgatgactcgcctctaaaatatctaatgcaaccaactcatcata 5411367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 34330274 - 34330371
Alignment:
Q  184 atgactcatctctaatatatctaa--caactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcattacagt 279  Q
    |||||||| |||||| ||||||||  ||||||| ||||||||||||||||||| |||||||  ||||||||||| |  |||| |||||||||||||||    
T  34330274 atgactcacctctaaaatatctaatacaactaattcatcataatctttacctatttgaacttttctattatatttgacctattttgggtcattacagt 34330371  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 38086135 - 38086204
Alignment:
Q  208 caactaactcatcataatctttacctacttgaactactctattatattaggtctatcttgggtcattaca 277  Q
    |||||||||||||||||||||||| |||||  |||| ||||| | ||| |  ||||||||||||||||||    
T  38086135 caactaactcatcataatctttacatactttgactattctatcacattggacctatcttgggtcattaca 38086204  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 47895958 - 47895797
Alignment:
Q  91 acaatgaccactacattatttatagcgttgacattctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactc 190  Q
    |||||||||| | | ||||||||||| |||||||||||| || | ||||||||||||| ||||| ||||| |||| || |||| || || |||| |||||    
T  47895958 acaatgaccatttctttatttatagcattgacattctaacaacttaaccaatgactcaccataa-gggtccctctcgatccttttagaatatgacgactc 47895860  T
Q  191 atctctaatatatctaa--caactaactcatcataatctttacctacttgaactactctatta 251  Q
    |  ||| | ||||||||  ||||||| |||||||||||||||||||||| ||||| |||||||    
T  47895859 acatcttaaatatctaatacaactaattcatcataatctttacctactttaactattctatta 47895797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 33293675 - 33293433
Alignment:
Q  28 aaaagctacaactatatc-attctaacataactaaattcttcattcattcattta-ataatgattacaatgaccactacattatttatagcgttgacatt 125  Q
    |||||||||||||||  | |||||||||  ||||||||||||||||||||||||  |||||||||||||||| ||   ||||||||||||| ||| ||||    
T  33293675 aaaagctacaactatggctattctaaca--actaaattcttcattcattcatttcgataatgattacaatgatcaacccattatttatagcattggcatt 33293578  T
Q  126 ctaagaattaaaccaatgactcatcataac--gggtctctctagacccttctaaaacatgatgactcatct-ctaatatatctaa--caactaactcatc 220  Q
    |            ||||||||||||| ||   || |||||||||| ||||||| | |||| |||||||||  |||| ||| ||||  |||||||||||||    
T  33293577 c------------caatgactcatcacaaaaaggatctctctagatccttctagagcatggtgactcatccactaaaatacctaatacaactaactcatc 33293490  T
Q  221 ataatctttacctacttgaactactctattatattaggtctatcttgggtcattaca 277  Q
    ||||||||||  |||||| |||||||||||||||| || |||| || ||||||||||    
T  33293489 ataatctttagttacttggactactctattatattgggcctattttaggtcattaca 33293433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 1826014 - 1825919
Alignment:
Q  28 aaaagctacaactatatcattctaacataactaaattcttcattcattcatttaataatgattacaatgaccactacattatttatagcgttgacatt 125  Q
    |||||||||||||| |  ||||||| | |||||| ||||||| |||||||||| | ||||||||||||||| |   ||||||||||||| ||||||||    
T  1826014 aaaagctacaactacactattctaaaa-aactaa-ttcttcactcattcatttcacaatgattacaatgacaaaaccattatttatagcattgacatt 1825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 33246778 - 33246734
Alignment:
Q  56 aactaaattcttcattcattcatttaataatgattacaatgacca 100  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||    
T  33246778 aactaaattcttcattcattcattccataatcattacaatgacca 33246734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 12636233 - 12636131
Alignment:
Q  138 ccaatgactcatcataacgggtctctctagacccttctaaaacatgatgactcatctctaatatatctaa--caactaactcatcataatctttacctac 235  Q
    |||||||||||||| ||  | |||||||| | |||  ||||||||||||||||| |||||| |||| |||   || |||||||| |||||||||| ||||    
T  12636233 ccaatgactcatcacaaaagatctctctaaatcctcttaaaacatgatgactcacctctaaaatatataatgtaattaactcattataatctttatctac 12636134  T
Q  236 ttg 238  Q
    |||    
T  12636133 ttg 12636131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 39587403 - 39587286
Alignment:
Q  82 ataatgattacaatgaccactacattatttatagcgttgacattctaagaattaaaccaatgactcatcataacgggtctctctagacccttctaaaaca 181  Q
    |||||||||||||||| || | | ||||||||||| ||  |||||||| || | ||||||| ||||| ||||| || |||||| ||| ||||||| ||||    
T  39587403 ataatgattacaatgatcattcccttatttatagcttttgcattctaacaacttaaccaattactcaccataatggatctctcaagatccttctagaaca 39587304  T
Q  182 tgatgactcatctctaat 199  Q
    |||||||||| |||||||    
T  39587303 tgatgactcacctctaat 39587286  T

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Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 177636 - 177463
Alignment:
Q  66 ttcattcattcatttaataatgattacaatgaccactacattatttatagcgttgacattctaagaattaaaccaatgactcatcataacgggtctctct 165  Q
    ||||||||||||||| |||||||||| |||||||| |   ||||||| ||| |||||| | ||| |||| |||  |||| ||| | |||  | |||||||    
T  177636 ttcattcattcatttcataatgattataatgaccaatcacttatttagagcattgacaatttaacaatttaactgatgagtcaccgtaatagatctctct 177537  T
Q  166 agacccttctaaaacatgatgactcatctctaatatatcta--acaactaactcatcataatctttacctactt 237  Q
    ||  |||| || || || ||||||||  ||||| |||||||  ||||  |||||||||||||||||||||||||    
T  177536 aggtccttttagaaaatcatgactcacatctaaaatatctaatacaataaactcatcataatctttacctactt 177463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 33524775 - 33524814
Alignment:
Q  58 ctaaattcttcattcattcatttaataatgattacaatga 97  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  33524775 ctaaattcttcattcattcatttgataatgattacaatga 33524814  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 22620738 - 22620790
Alignment:
Q  28 aaaagctacaactatatcattctaacataactaaattcttcattcattcattt 80  Q
    |||||||| ||||| |  ||||||||||||| ||||||| |||||||||||||    
T  22620738 aaaagctataactacactattctaacataacaaaattctccattcattcattt 22620790  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 41364752 - 41364713
Alignment:
Q  56 aactaaattcttcattcattcatttaataatgattacaat 95  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41364752 aactaaattcttcattcattcatttcataatgattacaat 41364713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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