View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_19 (Length: 281)

Name: NF3696_low_19
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_19
NF3696_low_19
[»] chr6 (2 HSPs)
chr6 (135-200)||(4298103-4298168)
chr6 (94-135)||(4298043-4298084)
[»] chr2 (2 HSPs)
chr2 (66-136)||(30696504-30696581)
chr2 (11-64)||(30696402-30696455)
[»] chr5 (1 HSPs)
chr5 (85-135)||(24073212-24073262)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 4298103 - 4298168
Alignment:
Q  135 tctttttcttgaatagaacaagcaattctcattgtcattataatatgaggctaaaaattaatagtt 200  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  4298103 tctttttcttgaatagaacaagcaatactcattgtcattattatatgaggccaaaaattaatagtt 4298168  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 4298043 - 4298084
Alignment:
Q  94 cctaatctcatgccttattaatattcctttgcaaaacatagt 135  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  4298043 cctaatttcatgccttattaatattcctttgcaaaacatagt 4298084  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 30696504 - 30696581
Alignment:
Q  66 ttagtggtccatcaatgtgatattggaac-------ctaatctcatgccttattaatattcctttgcaaaacatagtc 136  Q
    ||||||||||||||||||||||||||||        |||||| ||||||||||||| |||||||||||||||||||||    
T  30696504 ttagtggtccatcaatgtgatattggaatttgaaagctaatcgcatgccttattaacattcctttgcaaaacatagtc 30696581  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 30696402 - 30696455
Alignment:
Q  11 caaaggttaacgaaccctcatgcatgtgcttattaattaatattagagcctaat 64  Q
    ||||||||||| ||| |||||| | |||||| | ||||||||||||||||||||    
T  30696402 caaaggttaacaaactctcatgtacgtgcttgtaaattaatattagagcctaat 30696455  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 24073262 - 24073212
Alignment:
Q  85 atattggaacctaatctcatgccttattaatattcctttgcaaaacatagt 135  Q
    ||||| || ||||||| |||||||| |||||||||||| ||||||||||||    
T  24073262 atattagagcctaatcacatgcctttttaatattccttagcaaaacatagt 24073212  T

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