View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3696_low_2 (Length: 594)
Name: NF3696_low_2
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 13395268 - 13394689
Alignment:
| Q |
1 |
gtgtttctatattacgttatgcaatcaacaatctcaaacaaggatcaaaatatgtccttgattacttcacaaaaataaaaaccctatgggaggagcttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13395268 |
gtgtttctatattacgttatgcaatcaacaatctcaaacaaggatcaaaatatgtccttgattacttcacaaaaatgaaaaccctatgggaggagcttaa |
13395169 |
T |
|
| Q |
101 |
ttctcagaggcctacacctatttgtatatacatccatccttgtacatgtgatgctatgtgttctgcacacatttttcgcttagagggtcaagtcatacat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13395168 |
ttctcagaggcctacacctaattgtatatacatccatccttgtagatgtgacgctatgtgttctgcacgcatttttcgcttagagggtcaagtcatacat |
13395069 |
T |
|
| Q |
201 |
tttcgcaatttccaaataatataacctctaatcctgctattctttctcatcaggaagcctctactccaggtataaacaccattttctccaatactttaaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13395068 |
tttcgcaatttccaaataataaaacctctaatcctgctattctttctcatcaggaagcctctactccaggtataaacaccattttctccaatactttaaa |
13394969 |
T |
|
| Q |
301 |
atttcaaactcctatatggcggctcattgactctggtgcaaatgaacatatatggctcatcttgaaaagacattttatatttaatcacaatcagtgatta |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394968 |
atttcaaactcctatat---ggctcattgactctggtgcaaatgaacatatatggctcatcttgaaaagacattttatatttaatcacaatcagtgatta |
13394872 |
T |
|
| Q |
401 |
tatatgcttaggtagatattattgacatatttagaaaatggggtaaactcgtgcaagacacaagttcttgcactagttgtaacaagttgaaattcacatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394871 |
tatatgcttaggtagatattattgacatatttagaaaatggggtaaactcgtgcaagacacaagttcttgcactagttgtaacaagttgaaattcacatc |
13394772 |
T |
|
| Q |
501 |
ataaaacaaatacattattctataacagaaaaatacattattcattcacatatatgtgaatagtgctgaatttgaatccctatg |
584 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394771 |
ataaaacacatacattattctataacag-aaaatacattattcattcacatatatgtgaatagtgctgaatttgaatccctatg |
13394689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University