View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_20 (Length: 275)
Name: NF3696_low_20
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 16142050 - 16141803
Alignment:
| Q |
11 |
tcgaagaatatgacgtaatttgatccatgtagttaactacacttaataggacaaagctttgttgttgttgacgatgatgtatagactctcattcttgttt |
110 |
Q |
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| T |
16142050 |
tcgaacaatatgacgtaatttgatccatgtagttgactacacttaataggacaaagctttgttgttgttgacgatgatgtatagactctcattcttgttt |
16141951 |
T |
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| Q |
111 |
ttcttttagagggtatagactttaattctcttattggttctactcctgaataatataattgtatattaatatcaataaataaaacattgtaaccagaaat |
210 |
Q |
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| T |
16141950 |
ttcttttagagggtataggctttaattctcttattggttctactccggaataatataattgtatattaatatcaataaataa------------agaaat |
16141863 |
T |
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| Q |
211 |
ataaaaggtttcatttaacaatgtatctagacttttttcccatcaaatataagttattat |
270 |
Q |
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| T |
16141862 |
ataaaaggtttcatttaacattgtatctagacttttttcccatcaaatataagttattat |
16141803 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 36101839 - 36101778
Alignment:
| Q |
19 |
tatgacgtaatttgatccatgtagttaactacacttaataggacaaagctttgttgttgttg |
80 |
Q |
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| T |
36101839 |
tatgacgtaatttgatccatgtagttgaccccacttagtgggataaggcttggttgttgttg |
36101778 |
T |
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